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Job DescriptionP14081
Confidence100.00%DateThu Jan 5 11:33:54 GMT 2012
Rank24Aligned Residues235
% Identity29%Templatec1g7tA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20... ......30.........40.........50.........60.........70
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Query Sequence  IIATAGHVDHGKTTLLQAITGV. . . . . . . . . . . NADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPGHEKFLSNMLA
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Template Sequence  IVSVLGHVDHGKTTLLDHIRGSAVASRITQHIGATEIPMDVIEGICGDFLKKFSIRET. LPGLFFIDTPGHEAFTTLRKR
Template Known Secondary structure  STTSSTT


TTS
GGGTT
GGGGT.



TTT
GGGST
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Query Sequence  GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE. . . . . . . . . . . . . . . . . . . . . ARVDEVERQV
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Template Sequence  GGALADLAILIVDINEGFKPQTQEALNILRMYRTP. FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYEL
Template Known Secondary structure  TS
STTT


TT

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GGGSTT



TT

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   90.........100.........110.........120.... .....130.........140.........150.........160........
 
   130........ .140.........150.........160....... ..170.........180.........190.
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Query Sequence  KEVLREYGF. . . . . . . . . . . . AEAKLFITAATEGRGMDALREHLLQLPER. . . . . . EHASQHSFRLAIDRAFTVKGAGLV
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Template Sequence  VGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMT
Template Known Secondary structure  TT

TTT
S
TTTS

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TT
SGGG
TTSB

TTS
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   192.......200.........210...... ...220.. .......230........
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Query Sequence  VTGTALSGEVKVGDSLWLTGVNKPM. . RVRALH. AQNQPTETANAGQRIA
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Template Sequence  IDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPSRKKFQKVDEVVA
Template Known Secondary structure  STT
BSSS
S




SSS
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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