Return to main results Retrieve Phyre Job Id

Job DescriptionP27238
Confidence81.05%DateThu Jan 5 11:43:18 GMT 2012
Rank8Aligned Residues83
% Identity16%Templated2etha1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20..... ....30.........40.........50.........60.........70.........80....
Predicted Secondary structure 







...





























Query SS confidence 

















. . .


























































Query Sequence  MTTEELAECLGVAKQTVN. . . RWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPG
Query Conservation   

 


 
 

    
 ...  
  


  
 
 
  

            

   

   
        
  
  
  
Alig confidence 

















...













.
























...................
Template Conservation   
  


         

  
  
   


 
   .  
 
   
 

  
          ...................
Template Sequence  KKXKEIAEFLSTTKSNVTNVVDSLEKRGLVVREXD. PVDRRTYRVVLTEKGKEIFGEILSN. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  B
TTS
TTS
.TTTSS

...................
Template Predicted Secondary structure 







.







...................
Template SS confidence 















































































   47..50.........60.........70.........80. ........90.........100......
 
   85....90.........100.........110....
Predicted Secondary structure 




Query SS confidence 





























Query Sequence  ARAPAYRQIINAIDNMTDIEQEKVAQFLSR
Query Conservation     
           

  

 

  

 
Alig confidence  ....

























Template Conservation  ....           

 

   
   
 
Template Sequence  . . . . FESLLKSVLEKFSEEDFKVVSEGFNR
Template Known Secondary structure  ....TT

Template Predicted Secondary structure  ....



Template SS confidence 





























   107..110.........120.........130..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions