Job Description P0ACU7 Confidence 99.79% Date Thu Jan 5 11:19:05 GMT 2012 Rank 67 Aligned Residues 179 % Identity 12% Template c3s5rA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	E	D	V	L	G	E	A	L	K	L	L	E	L	Q	G	I	A	N	T	T	L	E	M	V	A	E	R	V	D	Y	P	L	D	E	L	R	R	F	W	P	D	K	E	A	I	L	Y	D	A	L	R	Y	L	S	Q	Q	I	D	V	W	R	R	Q	L	M	L	D	E	T	Q	T	A	E	Q	K	L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	E	L	L	L	D	A	A	T	T	L	F	A	E	Q	G	I	A	A	T	T	X	A	E	I	A	A	S	V	G	V	N	P	A	X	I	H	Y	Y	F	K	T	R	D	S	L	L	D	T	I	I	E	E	R	I	G	R	I	I	D	X	I	W	E	P	V	T	G	E	E	D	D	P	L	I	X	V	R	D
Template Known Secondary structure																			T	T	T									T	T	T											S	S												T										T	T			S			S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																											.	.	.
Query SS confidence																																		.	.																											.	.	.
Query Sequence		R	Y	Q	A	L	S	E	C	V	K	N	N	R	Y	P	G	C	L	F	I	A	A	C	T	F	Y	P	D	P	G	H	P	.	.	I	H	Q	L	A	D	Q	Q	K	S	A	A	Y	D	F	T	H	E	L	L	T	T	L	E	V	D	.	.	.	D	P	A	M	V	A	K	Q	M	E	L	V	L	E	G	C	L
Query Conservation																																		.	.																											.	.	.
Alig confidence																																		.	.																											.	.	.
Template Conservation
Template Sequence		L	V	N	R	I	V	N	T	C	E	T	X	L	W	L	P	S	L	W	I	R	E	I	V	N	E	G	G	A	L	R	E	K	X	L	N	N	I	P	I	D	K	X	N	K	F	S	A	K	I	A	E	G	Q	K	Q	G	V	I	N	S	G	I	D	S	R	L	L	I	G	S	I	I	G	L	T	X	L	P	L
Template Known Secondary structure														T										T	T	S	T	T		S	S						T	T																				T	S	S		T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		S	R	M	L	V	N	R	S	.	.	.	.	.	.	Q	A	D	V	D	T	A	H	R	L	A	E	D	I	L	R
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	A	K	L	R	D	Q	I	P	T	X	K	G	L	S	S	E	D	I	V	C	H	V	T	A	L	L	F	T
Template Known Secondary structure			T					T	T	S	G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions