Job Description P0ACU7 Confidence 99.78% Date Thu Jan 5 11:19:05 GMT 2012 Rank 80 Aligned Residues 189 % Identity 12% Template c3npiB_ PDB info PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution Resolution 2.96 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	R	E	D	V	L	G	E	A	L	K	L	L	E	L	Q	G	I	A	N	T	T	L	E	M	V	A	E	R	V	D	Y	P	L	D	E	L	R	R	F	W	P	D	K	E	A	I	L	Y	D	A	L	R	Y	L	S	Q	Q	I	D	V	W	R	R	Q	L	M	L	D	E	T	Q	T	A	E	Q	K	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	T	D	T	V	L	D	I	A	L	S	L	F	S	E	L	G	F	S	D	A	K	L	E	A	I	A	K	K	S	G	X	S	K	R	X	I	H	Y	H	F	G	D	K	R	G	L	Y	I	C	C	L	E	E	A	V	R	R	L	R	P	T	A	E	E	X	Y	L	A	S	A	V	P	V	E	G	V	R	T
Template Known Secondary structure																																													S																	S			T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																			.																											.	.	.
Query SS confidence																																			.																											.	.	.
Query Sequence		A	R	Y	Q	A	L	S	E	C	V	K	N	N	R	Y	P	G	C	L	F	I	A	A	C	T	F	Y	P	D	P	G	H	P	.	I	H	Q	L	A	D	Q	Q	K	S	A	A	Y	D	F	T	H	E	L	L	T	T	L	E	V	D	.	.	.	D	P	A	M	V	A	K	Q	M	E	L	V	L	E	G	C	L
Query Conservation																																			.																											.	.	.
Alig confidence																																			.																											.	.	.
Template Conservation
Template Sequence		I	V	E	A	V	F	H	R	Y	V	Q	H	P	E	A	V	R	X	L	Q	X	E	N	L	H	H	Y	G	K	V	A	E	A	S	P	L	S	D	Q	S	A	I	T	L	Q	L	D	R	L	L	X	L	G	Q	D	A	G	A	F	R	P	G	I	S	A	Q	D	V	F	T	L	I	A	S	I	A	V	F	R	I
Template Known Secondary structure																										S		T	T			T	T	S			S	S																			T	T	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		157	.	.	160	.	.	.									.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		S	R	M	L	V	N	R	.	.	.	.	.	.	.	.	S	Q	A	D	V	D	T	A	H	R	L	A	E	D	I	L	R	F	A	R	C	R	Q	G	G	A
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	R	S	T	T	L	N	L	Y	G	I	D	X	X	N	G	D	N	T	D	G	X	R	R	X	A	V	D	T	V	L	A	F	L	T	S	N	L	K	S
Template Known Secondary structure			T												T	T	S																				T			S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions