Job Description P0ACU7 Confidence 99.87% Date Thu Jan 5 11:19:05 GMT 2012 Rank 13 Aligned Residues 179 % Identity 17% Template c1sgmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		Q	R	E	D	V	L	G	E	A	L	K	L	L	E	L	Q	G	I	A	N	T	T	L	E	M	V	A	E	R	V	D	Y	P	L	D	E	L	R	R	F	W	P	D	.	K	E	A	I	L	Y	D	A	L	R	Y	L	S	Q	Q	I	D	V	W	R	R	Q	L	M	L	D	E	T	Q	T	A	E	Q	K	L	L
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		S	R	E	K	I	L	H	T	A	S	R	L	S	Q	L	Q	G	Y	H	A	T	G	L	N	Q	I	V	K	E	S	G	A	P	K	G	S	L	Y	H	F	F	P	N	G	K	E	E	L	A	I	E	A	V	T	Y	T	G	K	I	V	E	H	L	I	Q	Q	S	M	D	E	S	S	D	P	V	E	A	I	Q	L
Template Known Secondary structure																			T	T	T														S						S	T	T	T																											T		S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		A	R	Y	Q	A	L	S	E	C	V	K	N	N	R	Y	P	G	C	L	F	I	A	A	C	T	F	Y	P	D	P	G	H	P	I	H	Q	L	A	D	Q	Q	K	S	A	A	Y	D	F	T	H	E	L	L	T	T	L	E	V	D	.	.	D	P	A	M	V	A	K	Q	M	E	L	V	L	E	G	C	L	S	R
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		F	I	K	K	T	A	S	Q	F	D	N	T	E	S	I	K	G	I	P	V	G	L	L	A	S	E	T	A	L	I	S	E	P	L	R	T	V	C	M	K	V	F	K	S	W	E	A	V	F	A	R	K	L	M	E	N	G	F	A	E	E	E	A	N	Q	L	G	T	L	I	N	S	M	I	E	G	G	I	M	L
Template Known Secondary structure									T	T	S	S	G	G	G					T	T								T	T	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	V	N	R	S	Q	A	D	V	D	T	A	H	R	L	A	E	D	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	N	K	D	K	T	P	L	L	L	I	A	E	Q	I	P	V	L	V	R
Template Known Secondary structure						T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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