Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACU7
Confidence99.83%DateThu Jan 5 11:19:05 GMT 2012
Rank35Aligned Residues180
% Identity13%Templatec1jumB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  REDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLAR
Query Conservation 
  

 

  
    
    

  

  



  


  
 

  
  
                               
Alig confidence 















































































Template Conservation 
  

 

  

   
    

  

  



  
 
  
 


 
                                  
Template Sequence  KDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYN
Template Known Secondary structure  T
TTTS
TT

S
STTS

S
Template Predicted Secondary structure 

















Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   83......90..... ....100.........110.........120.........130......... 140.........150.........
Predicted Secondary structure 


.








..
Query SS confidence 












.











































. .



















Query Sequence  YQALSECVKNNRY. PGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVD. . DPAMVAKQMELVLEGCLSRM
Query Conservation               .                                            ..     
  
     
     
Alig confidence 












.











































..



















Template Conservation                                                 
      
          
              
Template Sequence  ELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFT
Template Known Secondary structure 
SSSGGGTTTTSSTTTSS


S
TT
Template Predicted Secondary structure 














Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   160.........170.........180..
Predicted Secondary structure 




Query SS confidence 






















Query Sequence  LVNRSQADVDTAHRLAEDILRFA
Query Conservation                    

   
Alig confidence 






















Template Conservation                     
 

Template Sequence  HEQNINERIKLMNKFSQIFLNGL
Template Known Secondary structure  TTS
Template Predicted Secondary structure 




Template SS confidence 






















   164.....170.........180......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions