Job Description P0ACU7 Confidence 99.72% Date Thu Jan 5 11:19:05 GMT 2012 Rank 104 Aligned Residues 176 % Identity 15% Template c1bjzA_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:tetracycline repressor; PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	R	E	D	V	L	G	E	A	L	K	L	L	E	L	Q	G	I	A	N	T	T	L	E	M	V	A	E	R	V	D	Y	P	L	D	E	L	R	R	F	W	P	D	K	E	A	I	L	Y	D	A	L	R	Y	L	S	Q	Q	I	D	V	W	R	R	Q	L	M	L	D	E	T	Q	T	A	E	Q	K	L	L
Query Conservation
Alig confidence																																																																.	.	.
Template Conservation																																																																.	.	.
Template Sequence		L	N	R	E	S	V	I	D	A	A	L	E	L	L	N	E	T	G	I	D	G	L	T	T	R	K	L	A	Q	K	L	G	I	E	Q	P	T	L	Y	W	H	V	K	N	K	R	A	L	L	D	A	L	A	V	E	I	L	A	R	H	H	D	.	.	.	Y	S	L	P	A	A	G	E	S	W	Q	S	F	L	R
Template Known Secondary structure		S	S																														T	S																													T	.	.	.	T	S	S			T	T
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	Q	A	L	S	E	C	V	K	N	N	R	Y	P	G	C	L	F	I	A	A	C	T	F	Y	P	D	P	G	H	P	I	H	Q	L	A	D	Q	Q	K	S	A	A	Y	D	F	T	H	E	L	L	T	T	L	E	V	D	D	P	A	M	V	A	K	Q	M	E	L	V	L	E	G	C	L	S	R	M	L
Query Conservation
Alig confidence																								.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																								.	.	.	.	.																					.	.	.	.	.	.
Template Sequence		N	N	A	M	S	F	R	R	A	L	L	R	Y	R	D	G	A	K	V	H	L	G	.	.	.	.	.	T	R	P	D	E	K	Q	Y	D	T	V	E	T	Q	L	R	F	M	T	E	.	.	.	.	.	.	N	G	F	S	L	R	D	G	L	Y	A	I	S	A	V	S	H	F	T	L	G	A	V	L	E	Q	Q
Template Known Secondary structure													T	S	T	T							T	.	.	.	.	.	S																				.	.	.	.	.	.	T	T
Template Predicted Secondary structure																								.	.	.	.	.																					.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		161	.														.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	Q	A	D	V	D	T	A	H	R	L	A	E	D	I	L	R	F	A	R	C	R	Q	G	G	A	L
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	H	N	L	P	P	L	L	R	E	A	L	Q	I	M	D	S	D	D	G	E	Q	A	F	L	H	G	L	E	S	L	I	R	G	F	E	V	Q	L	T	A	L	L
Template Known Secondary structure																	T	T	S		S																				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions