Job Description P27248 Confidence 100.00% Date Thu Jan 5 11:43:27 GMT 2012 Rank 3 Aligned Residues 357 % Identity 26% Template c1x31A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.									.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	T	P	L	Y	E	Q	H	T	L	C	G	A	R	M	V	D	F	H	G	W	M	M	P	L	H	Y	G	S	Q	.	.	.	.	.	.	.	.	I	D	E	H	H	A	V	R	T	D	A	G	M	F	D	V	S	H	M	T	I	V	D	L	R	G	S	R	T	R	E	F	L	R	Y	L	L	A	N	D	V
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	T	A	M	H	P	W	H	L	A	H	G	A	K	F	E	D	V	G	Q	W	K	R	P	W	Y	Y	P	Q	D	G	E	S	M	D	E	A	V	Y	R	E	C	K	A	V	R	D	S	V	G	M	L	D	A	S	T	L	G	K	I	E	I	R	G	K	D	A	A	E	F	L	N	R	M	Y	T	N	G	Y
Template Known Secondary structure		B			T	T							T	T							T	T										S	S																	S							T	T	S							S	T	T									B	S	S
Template Predicted Secondary structure
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.					.
Query SS confidence																																																												.	.	.	.					.
Query Sequence		A	K	L	T	K	S	G	K	A	L	Y	S	G	M	L	N	A	S	G	G	V	I	D	D	L	I	V	Y	Y	F	T	E	D	F	F	R	L	V	V	N	S	A	T	R	E	K	D	L	S	W	I	T	Q	H	A	E	P	F	.	.	.	.	G	I	E	I	.	T	V	R	D	D	L	S	M	I	A	V	Q	G
Query Conservation																																																												.	.	.	.					.
Alig confidence					.																																																							.	.	.	.					.
Template Conservation					.
Template Sequence		T	K	L	.	K	V	G	M	G	R	Y	G	V	M	C	K	A	D	G	M	I	F	D	D	G	V	T	L	R	L	A	E	D	R	F	L	M	H	T	T	T	G	G	A	A	D	V	L	D	W	L	E	E	W	L	Q	T	E	W	P	E	L	D	V	T	C	T	S	V	T	E	Q	L	A	T	V	A	V	V	G
Template Known Secondary structure		S	S		.		T	T	B									T	T	S													T	T								G	G	G															T		T	T	S								T	T	T								S
Template Predicted Secondary structure					.
Template SS confidence
		654	.	.		.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.
Predicted Secondary structure															.	.	.																.																																								.	.	.	.
Query SS confidence															.	.	.																.																																								.	.	.	.
Query Sequence		P	N	A	Q	A	K	A	A	T	L	F	N	D	.	.	.	A	Q	R	Q	A	V	E	G	M	K	P	F	F	G	V	.	Q	A	G	D	L	F	I	A	T	T	G	Y	T	G	E	A	G	Y	E	I	A	L	P	N	E	K	A	A	D	F	W	R	A	L	V	E	A	G	V	.	.	.	.	K	P	C	G	L
Query Conservation															.	.	.																.																																								.	.	.	.
Alig confidence															.	.	.																.																																								.	.	.	.
Template Conservation
Template Sequence		P	R	S	R	D	V	I	A	K	L	A	S	S	L	D	V	S	N	D	A	F	K	F	M	A	F	Q	D	V	T	L	D	S	G	I	E	A	R	I	S	R	I	S	F	S	G	E	L	A	F	E	I	A	I	P	A	W	H	G	L	Q	V	W	E	D	V	Y	A	A	G	Q	E	F	N	I	T	P	Y	G	T
Template Known Secondary structure		T	T									S	T	T				S	T	T	T	S		T	T	B							T	T	S										S	S	S	S									G	G	G												T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.												.
Query SS confidence																																																										.	.												.
Query Sequence		G	A	R	D	T	L	R	L	E	A	G	M	N	L	Y	G	Q	E	M	D	E	T	I	S	P	L	A	A	N	M	G	W	T	I	A	W	E	P	A	D	R	D	F	I	G	R	E	A	L	E	V	Q	R	E	H	G	.	.	T	E	K	L	V	G	L	V	M	T	E	.	K	G	V	L	R	N	E	L	P	V
Query Conservation																																																										.	.												.
Alig confidence																																				.	.						.															.	.												.
Template Conservation																																				.	.						.
Template Sequence		E	T	M	H	V	L	R	A	E	K	G	F	I	I	V	G	Q	D	T	D	G	T	V	T	P	Q	D	A	G	M	E	W	V	V	.	.	S	K	L	K	D	.	F	V	G	K	R	S	F	S	R	E	D	N	V	R	E	D	R	K	H	L	V	S	V	L	P	V	D	S	S	L	R	L	A	E	G	A	A	L
Template Known Secondary structure											T	T				T	T	T	T			S	S			T	T	T	T	T		G	G	G	S	.	.		S	S	S		.		T	T	G	G	G	G	G	S	T	G	G	G		S											S	S	T	T					T	T
Template Predicted Secondary structure																																				.	.						.
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.			.	.	.	850	.		.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure								.	.	.	.																															.	.	.
Query SS confidence								.	.	.	.																															.	.	.
Query Sequence		R	F	T	D	A	Q	.	.	.	.	G	N	Q	H	E	G	I	I	T	S	G	T	F	S	P	T	L	G	Y	S	I	A	L	A	R	V	P	E	G	I	.	.	.	G	E	T	A	I	V	Q	I	R	N	R	E	M	P	V	K	V	T	K	P	V	F	V	R	N	G	K	A	V
Query Conservation								.	.	.	.																															.	.	.
Alig confidence								.	.	.	.																															.	.	.
Template Conservation
Template Sequence		V	A	A	D	A	V	A	S	E	G	V	T	P	M	E	G	W	V	T	H	A	Y	N	S	P	A	L	G	R	T	F	G	L	A	L	I	K	N	G	R	N	R	I	G	E	V	L	K	T	P	V	D	G	Q	L	V	D	V	Q	V	S	D	L	V	L	F	D	P	E	G	S	R
Template Known Secondary structure				T	T				B	T	T	B														T	T	T	T									T	T	G	G	G		T	T								T	T										S			S		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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