Job Description P27248 Confidence 100.00% Date Thu Jan 5 11:43:27 GMT 2012 Rank 14 Aligned Residues 306 % Identity 15% Template c1vlyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:unknown protein from 2d-page; PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	T	D	A	G	M	F	D	V	S	H	M	T	I	V	D	L	R	G	S	R	T	R	E	F	L	R	Y	L	L	A	N	D	V	A	K	L	T	K	S	G	K	A	L	Y	S	G	M	L	N	A	S	G	G	V	I	D	D	L	I	V	Y	Y	F	T	E	D	F	F	R	L	V	V	N	S	A	T	R
Query Conservation
Alig confidence																																									.																											.
Template Conservation																																									.																											.
Template Sequence		S	A	R	L	P	L	T	L	X	T	L	D	D	W	A	L	A	T	I	T	G	A	D	S	E	K	Y	X	Q	G	Q	V	T	A	D	V	S	Q	X	.	A	E	D	Q	H	L	L	A	A	H	C	D	A	K	G	K	X	W	S	N	L	R	L	F	R	D	.	G	D	G	F	A	W	I	E	R	R	S	V	R
Template Known Secondary structure		G	G	G			S						T	T								S	T	T							T	T	B	S	S		G	G	G		.		T	T										T	T	S												.	T	T
Template Predicted Secondary structure																																									.																											.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	D	L	S	W	I	T	Q	H	A	E	P	F	G	I	E	I	T	V	R	D	D	L	S	M	I	A	V	Q	G	P	N	A	Q	A	K	A	A	T	L	F	N	D	A	Q	R	Q	A	V	E	G	M	K	P	F	F	G	V	Q	A	G	D	L	F	I	A	T	T	G	Y	T	G	E	A	G	Y	E	I	A
Query Conservation
Alig confidence																																																		.	.	.	.	.	.																					.
Template Conservation																																																		.	.	.	.	.	.																					.
Template Sequence		E	P	Q	L	T	E	L	K	K	Y	A	V	F	S	K	V	T	I	A	P	D	D	E	R	V	L	L	G	V	A	G	F	Q	A	R	A	A	L	A	N	L	F	S	E	L	P	S	K	.	.	.	.	.	.	E	K	Q	V	V	K	E	G	A	T	T	L	L	W	F	E	H	P	A	E	.	R	F	L	I	V
Template Known Secondary structure										T	T		S	S	S	S								S	S							S	T	T							T	T	S	S				B	T	.	.	.	.	.	.	T	B						T	T								S	S	S		.
Template Predicted Secondary structure																																																		.	.	.	.	.	.																					.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	P	N	E	K	A	A	D	F	W	R	A	L	V	E	A	G	V	K	P	C	G	L	G	A	R	D	T	L	R	L	E	A	G	M	N	L	Y	G	Q	E	M	D	E	T	I	S	P	L	A	A	N	M	G	W	T	I	A	W	E	P	A	D	R	D	F	I	G	R	E	A	L	E	V	Q	R	E	H	G	.
Query Conservation																																																																																	.
Alig confidence															.																																																																		.
Template Conservation															.
Template Sequence		T	D	E	A	T	A	N	X	L	T	D	K	L	.	R	G	E	A	E	L	N	N	S	Q	Q	W	L	A	L	N	I	E	A	G	F	P	V	I	D	A	A	N	S	G	Q	F	I	P	Q	A	T	N	L	Q	A	L	G	G	I	S	F	K	K	G	C	Y	T	G	Q	E	X	V	A	R	A	K	F	R	G	A
Template Known Secondary structure															.	B	T	T	B																T						G	G	G	T	T	S			G	G	G	G	T	G	G	G	T	T				S	S	S				T	T							T	T	S	T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
			278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.																																																										.
Query SS confidence		.																																																										.
Query Sequence		.	T	E	K	L	V	G	L	V	M	T	E	K	G	V	L	R	N	E	L	P	V	R	F	T	D	A	Q	G	N	Q	H	E	G	I	I	T	S	G	T	F	S	P	T	L	G	Y	S	I	A	L	A	R	V	P	E	G	I	.	G	E	T	A	I	V	Q	I	R	N	R	E	M	P	V	K	V	T	K	P	V
Query Conservation		.																																																										.
Alig confidence		.																																											.	.														.
Template Conservation																																													.	.
Template Sequence		N	K	R	A	L	W	L	L	A	G	S	A	S	R	L	P	E	A	G	E	D	L	E	L	K	X	G	E	N	W	R	R	T	G	T	V	L	A	A	V	K	L	E	.	.	D	G	Q	V	V	V	Q	V	V	X	N	N	D	X	E	P	D	S	I	F	R	V	R	D	D	A	N	T	L	H	I	E	P	L	P
Template Known Secondary structure														S	S				T	T								T	T															T	.	.	T	S										T	T			T	T					S	T	T		S	S								S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		356
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		322

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions