Job Description P27248 Confidence 100.00% Date Thu Jan 5 11:43:27 GMT 2012 Rank 4 Aligned Residues 354 % Identity 37% Template c1v5vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	Q	Q	T	P	L	Y	E	Q	H	T	L	C	G	A	R	M	V	D	F	H	G	W	M	M	P	L	H	Y	G	S	Q	I	D	E	H	H	A	V	R	T	D	A	G	M	F	D	V	S	H	M	T	I	V	D	L	R	G	S	R	T	R	E	F	L	R	Y	L	L	A	N	D	V	A	K	L	T	K	S
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		M	V	K	R	V	H	I	F	D	W	H	K	E	H	A	R	K	I	E	E	F	A	G	W	E	M	P	I	W	Y	S	S	I	K	E	E	H	L	A	V	R	N	A	V	G	I	F	D	V	S	H	M	G	E	I	V	F	R	G	K	D	A	L	K	F	L	Q	Y	V	T	T	N	D	I	S	K	P	.	P	A
Template Known Secondary structure				B			T	T									S						T	T							S	S												S							T	T	S							S	T	T									S	S	S		T	T	S	S	.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.								.
Query SS confidence																																																			.	.	.	.	.	.								.
Query Sequence		G	K	A	L	Y	S	G	M	L	N	A	S	G	G	V	I	D	D	L	I	V	Y	Y	F	T	E	D	F	F	R	L	V	V	N	S	A	T	R	E	K	D	L	S	W	I	T	Q	H	A	.	.	.	.	.	.	E	P	F	G	I	E	I	.	T	V	R	D	D	L	S	M	I	A	V	Q	G	P	N	A	Q
Query Conservation																																																			.	.	.	.	.	.								.
Alig confidence																																																			.	.	.	.	.	.								.
Template Conservation
Template Sequence		I	S	G	T	Y	T	L	V	L	N	E	R	G	A	I	K	D	E	T	L	V	F	N	M	G	N	N	E	Y	L	M	I	C	D	S	D	A	F	E	K	L	Y	A	W	F	T	Y	L	K	R	T	I	E	Q	F	T	K	L	D	L	E	I	E	L	K	T	Y	D	I	A	M	F	A	V	Q	G	P	K	A	R
Template Known Secondary structure		S										T	T	S													T	T								T	T	T																	T	T	S										T	T	T								S	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.															.	.	.	.	.	.	.	.	210	.	.	.	.					.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		A	K	A	A	T	L	F	N	D	A	Q	R	Q	A	V	E	G	M	K	P	F	F	G	V	Q	A	G	D	L	F	I	A	T	T	G	Y	T	G	E	A	G	Y	E	I	A	L	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	A	D	F	W	R	A	L	V	E	A	.	.	.	.	G
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		D	L	A	K	D	L	F	G	I	D	I	N	E	M	W	W	F	Q	A	R	W	V	E	L	D	G	I	K	M	L	L	S	R	S	G	Y	T	G	E	N	G	F	E	V	Y	I	E	D	A	N	P	Y	H	P	D	E	S	K	R	G	E	P	E	K	A	L	H	V	W	E	R	I	L	E	E	G	K	K	Y	G
Template Known Secondary structure									S			G	G	G	S		T	T	B							T	T										S	S	S	S												T	T		S	S	G	G	G																			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																													.	.	.	.	.	.	.	.	.																																					.
Query Sequence		V	K	P	C	G	L	G	A	R	D	T	L	R	L	E	A	G	M	N	L	Y	G	Q	E	M	D	E	.	.	.	.	.	.	.	.	.	T	I	S	P	L	A	A	N	M	G	W	T	I	A	W	E	P	A	D	R	D	F	I	G	R	E	A	L	E	V	Q	R	E	H	G	T	.	E	K	L	V	G	L	V
Query Conservation																													.	.	.	.	.	.	.	.	.																																					.
Alig confidence																													.	.	.	.	.	.	.	.	.														.	.						.																.
Template Conservation																																																			.	.						.
Template Sequence		I	K	P	C	G	L	G	A	R	D	T	L	R	L	E	A	G	Y	T	L	Y	G	N	E	T	K	E	L	Q	L	L	S	T	D	I	D	E	V	T	P	L	Q	A	N	L	E	F	A	I	.	.	Y	W	D	K	D	.	F	I	G	K	D	A	L	L	K	Q	K	E	R	G	V	G	R	K	L	V	H	F	K
Template Known Secondary structure																		T				B	T	T	T	B						S	S		S			S	S		T	T	T	T	T		G	G	G		.	.		T	T	S		.		T	T
Template Predicted Secondary structure																																																			.	.						.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		M	T	E	K	G	V	L	R	N	E	L	P	V	R	F	T	D	A	Q	G	N	Q	H	E	G	I	I	T	S	G	T	F	S	P	T	L	G	Y	S	I	A	L	A	R	V	P	E	G	I	.	.	.	G	E	T	A	I	V	Q	I	R	N	R	E	M	P	V	K	V	T	K	P	V	F	V	R	N	G	K	A
Query Conservation																																																			.	.	.
Alig confidence																	.	.	.	.																															.	.	.
Template Conservation																	.	.	.	.
Template Sequence		M	I	D	K	G	I	P	R	E	G	Y	K	V	Y	A	.	.	.	.	N	G	E	M	I	G	E	V	T	S	G	T	L	S	P	L	L	N	V	G	I	G	I	A	F	V	K	E	E	Y	A	K	P	G	I	E	I	E	V	E	I	R	G	Q	R	K	K	A	V	T	V	T	P	P	F	Y	D	P	K	K	Y
Template Known Secondary structure			S	S	S					T	T						.	.	.	.	T	T													T	T	T		S									G	G	G		S	T	T								T	T										S		S	S		T	T	T	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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