Job Description P27248 Confidence 100.00% Date Thu Jan 5 11:43:27 GMT 2012 Rank 2 Aligned Residues 354 % Identity 25% Template c1pj6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid Resolution 1.65 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																													.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	T	P	L	Y	E	Q	H	T	L	C	G	A	R	M	V	D	F	H	G	W	M	M	P	L	H	Y	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	D	E	H	H	A	V	R	T	D	A	G	M	F	D	V	S	H	M	T	I
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	S	P	F	H	A	R	H	K	E	L	G	A	F	F	L	E	A	G	G	W	E	R	P	Y	W	F	E	A	N	A	A	L	L	K	E	M	P	A	E	W	L	P	P	A	R	D	A	W	S	G	M	F	S	S	P	I	A	A	A	E	A	W	K	T	R	T	A	V	A	M	Y	D	M	T	P	L	K	R
Template Known Secondary structure		B			T	T							T	T							T	T								G	G	G	G	G	G	G	G	G	S		G	G	G							T	T	T	T	T	T			T												S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	D	L	R	G	S	R	T	R	E	F	L	R	Y	L	L	A	N	D	V	A	K	L	T	K	S	G	K	A	L	Y	S	G	M	L	N	A	S	G	G	V	I	D	D	L	I	V	Y	Y	F	T	E	D	F	F	R	L	V	V	N	S	A	T	R	E	K	D	L	S	W	I	T	Q	H	A	E	P	F	.	.
Query Conservation																																																																																.	.
Alig confidence																								.	.																																																							.	.
Template Conservation																								.	.
Template Sequence		L	E	V	S	G	P	G	A	L	K	L	L	Q	E	L	T	T	A	D	L	A	K	.	.	K	P	G	A	V	T	Y	T	L	L	L	D	H	A	G	G	V	R	S	D	I	T	V	A	R	L	S	E	D	T	F	Q	L	G	A	N	G	N	I	D	T	A	Y	F	E	R	A	A	R	H	Q	T	Q	S	G	S
Template Known Secondary structure						S	T	T									B	S	S					.	.		T	T	B									T	T	S													T	T							S	S																		S
Template Predicted Secondary structure																								.	.
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.			.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
					133	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.	.	.					.																															.	.
Query SS confidence		.	.	.					.																															.	.
Query Sequence		.	.	.	G	I	E	I	.	T	V	R	D	D	L	S	M	I	A	V	Q	G	P	N	A	Q	A	K	A	A	T	L	F	N	D	A	Q	R	Q	.	.	A	V	E	G	M	K	P	F	F	G	V	Q	A	G	D	L	F	I	A	T	T	G	Y	T	G	E	A	G	Y	E	I	A	L	P	N	E	K	A	A	D
Query Conservation		.	.	.					.																															.	.
Alig confidence		.	.	.					.																															.	.
Template Conservation
Template Sequence		A	T	D	W	V	Q	V	R	D	T	T	G	G	T	C	C	I	G	L	W	G	P	L	A	R	D	L	V	S	K	V	S	D	D	D	F	T	N	D	G	L	K	Y	F	R	A	K	N	V	V	I	G	G	I	P	V	T	A	M	R	L	S	Y	V	G	E	L	G	W	E	L	Y	T	S	A	D	N	G	Q	R
Template Known Secondary structure		T	T									G	G	G								S	T	T						T	T	S			S			S	T	T	T	S		T	T	B							T	T										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.
Predicted Secondary structure										.	.	.	.																																																																.
Query SS confidence										.	.	.	.																																																																.
Query Sequence		F	W	R	A	L	V	E	A	.	.	.	.	G	V	K	P	C	G	L	G	A	R	D	T	L	R	L	E	A	G	M	N	L	Y	G	Q	E	M	D	E	T	I	S	P	L	A	A	N	M	G	W	T	I	A	W	E	P	A	D	R	D	F	I	G	R	E	A	L	E	V	Q	R	E	H	G	.	T	E	K	L
Query Conservation										.	.	.	.																																																																.
Alig confidence										.	.	.	.																																										.	.																					.
Template Conservation																																																							.	.
Template Sequence		L	W	D	A	L	W	Q	A	G	Q	P	F	G	V	I	A	A	G	R	A	A	F	S	S	L	R	L	E	K	G	Y	R	S	W	G	T	D	M	T	T	E	H	D	P	F	E	A	G	L	G	F	A	V	.	.	K	M	A	K	E	S	F	I	G	K	G	A	L	E	G	R	T	E	E	A	S	A	R	R	L
Template Known Secondary structure											G	G	G	T																T	T				B	T	T	T	B		T	T	S		T	T	T	T	T		G	G	G		.	.		T	T	S	S			T	T	T	G	G	G	T	T			S	T	T		S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.			.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	G	L	V	M	T	E	K	G	V	L	R	N	E	L	P	V	R	F	T	D	A	Q	G	N	Q	H	E	G	I	I	T	S	G	T	F	S	P	T	L	G	Y	S	I	A	L	A	R	V	P	E	G	I	.	.	G	E	T	A	I	V	Q	I	R	N	R	E	M	P	V	K	V	T	K	P	V	F	V	R	N
Query Conservation																																																							.	.
Alig confidence																					.	.	.																																.	.
Template Conservation																					.	.	.
Template Sequence		R	C	L	T	I	D	D	G	R	S	I	V	L	G	K	E	P	V	F	.	.	.	Y	K	E	Q	A	V	G	Y	V	T	S	A	A	Y	G	Y	T	V	A	K	P	I	A	Y	S	Y	L	P	G	T	V	S	V	G	D	S	V	D	I	E	Y	F	G	R	R	I	T	A	T	V	T	E	D	P	L	Y	D	P
Template Known Secondary structure							T	T	S						S						.	.	.		T	T													T	T	T	T										T	T	S		T	T								T	T										S		S	S		T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.				.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
		360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	M	T	R
Template Known Secondary structure		T		T	T
Template Predicted Secondary structure
Template SS confidence
		824	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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