Job Description P75683 Confidence 99.88% Date Thu Jan 5 12:13:04 GMT 2012 Rank 4 Aligned Residues 368 % Identity 13% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Y	G	L	G	D	T	A	C	G	F	V	W	Q	A	T	M	F	L	L	A	Y	F	Y	T	D	V	F	G	L	S	A	G	I	M	G	T	L	F	L	V	S	R	V	L	D	A	V	T	D	P	L	M	G	L	L	V	D	R	T	R	T	R	H	G	Q	F	R	P	F	L	L	W	G	A	I	P	F	G
Query Conservation
Alig confidence																									.																																							.	.	.	.	.
Template Conservation																									.																																							.	.	.	.	.
Template Sequence		L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	.	.	.	.	.	R	R	P	V	I	L	V	G	M	S	I	F	M
Template Known Secondary structure																									.			T	T	S	S	S	T	T																			T	T						T	T	S		.	.	.	.	.
Template Predicted Secondary structure																									.																																							.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	C	V	L	T	F	Y	T	P	D	F	S	A	Q	G	K	I	I	Y	A	C	V	T	Y	I	L	L	T	L	V	Y	T	F	V	N	V	P	Y	C	A	M	P	G	V	I	T	A	D	P	K	E	R	H	A	L	Q	S	W	R	F	F	L	A	A	A	G	S	L	A	I	S	G	I	A	L	P	L	V	S
Query Conservation
Alig confidence																.	.	.	.	.	.																																																											.	.
Template Conservation																.	.	.	.	.	.																																																											.	.
Template Sequence		L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	.	.
Template Known Secondary structure																.	.	.	.	.	.																													T	S	S			S																							S	S	.	.
Template Predicted Secondary structure																.	.	.	.	.	.																																																											.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	G	K	G	D	E	Q	V	G	Y	F	G	A	M	C	V	L	G	L	S	G	V	V	L	L	Y	V	C	F	F	T	T	K	E	R	Y	T	F	E	V	Q	P	G	S	S	V	A	K	D	L	K	L	L	L	G	N	S	Q	W	R	I	M	C	A	F	K	M	M	A	T	C	S	N	V	V	R	G	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S
Template Known Secondary structure		.	.	.	.	.	.																										S	S				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		T	L	Y	F	V	K	Y	V	M	D	H	P	E	L	A	T	Q	F	L	L	Y	G	S	L	A	T	M	F	G	S	L	C	S	S	R	L	L	G	R	F	D	R	V	T	A	F	K	W	I	I	V	A	Y	S	L	I	S	L	L	I	F	.	V	T	P	A	E	H	I	A	L	I	F	A	L	N	I	L	F	L
Query Conservation																																																															.
Alig confidence																																																															.
Template Conservation
Template Sequence		G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F
Template Known Secondary structure		S		S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	F	N	T	T	T	P	L	Q	W	L	M	A	S	D	V	V	D	Y	E	E	S	R	S	G	R	R	L	D	G	L	V	F	S	T	Y	L	F	S	L	K	I	G	L	A	I	G	G	A	V	V	G	W	I	L	A	Y	V	N	Y	S	A	S	S	S	V	Q	P	V	E	V	L	T	T	I	K	I	L	F
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	.	.	.	.	.	.	.	.	P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	G	L	L	M
Template Known Secondary structure							T	S	S	T	T						T			.	.	.	.	.	.	.	.																							S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.														.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	V	P	V	V	L	Y	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	M	G	L	L	I	V	L	C
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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