Job Description Q47141 Confidence 100.00% Date Thu Jan 5 12:36:18 GMT 2012 Rank 5 Aligned Residues 284 % Identity 20% Template c3t1bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	L	R	H	L	R	Y	F	V	A	V	A	Q	A	L	N	F	T	R	A	A	E	K	L	H	T	S	Q	P	S	L	S	S	Q	I	R	D	L	E	N	C	V	G	V	P	L	L	V	R	D	K	R	K	V	A	L	T	A	A	G	E	C	F	L	Q	D	A	L	A	I	L	E	Q	A	E	N	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	L	D	D	L	N	L	F	R	L	V	V	E	N	G	S	Y	T	S	T	S	K	K	T	M	I	P	V	A	T	I	T	R	R	I	Q	A	L	E	D	S	L	N	L	R	L	L	N	R	H	A	R	K	L	T	L	T	E	A	G	E	R	F	Y	K	D	C	S	P	L	L	E	R	L	A	S	M	T	E
Template Known Secondary structure																	S	S																											T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		R	A	R	K	I	V	Q	E	D	R	Q	L	.	T	I	G	F	V	P	S	A	E	V	N	L	L	P	K	V	L	P	M	F	R	L	R	Q	P	D	T	L	I	E	L	V	S	L	I	T	T	Q	Q	E	E	K	I	R	R	G	E	L	D	V	G	L	M	R	H	P	V	Y	S	P	E	I	D	Y	L	E	L
Query Conservation														.
Alig confidence														.																																									.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		E	I	T	D	E	C	R	G	A	S	G	R	I	R	I	S	A	P	S	E	L	T	K	R	M	M	M	P	M	F	N	A	F	M	E	K	Y	P	D	I	H	I	E	L	M	M	S	N	Q	A	D	L	D	.	.	.	.	P	T	E	W	D	V	I	F	R	V	G	P	Q	R	D	S	S	L	I	A	R	K	I
Template Known Secondary structure							S			S										T	T	T	T	T	T	T													T	T									S	S					.	.	.	.	S	T	T		S						S							S
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	E	P	L	V	V	V	L	P	V	D	H	P	L	A	H	E	K	E	I	T	A	A	Q	L	D	G	V	N	F	V	S	T	D	P	V	Y	S	G	S	L	A	P	I	V	K	A	W	F	A	Q	E	N	S	Q	P	N	I	V	Q	V	A	T	N	I	L	V	T	M	N	L	V	G	M	G	L	G	V	T
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		G	E	V	K	D	I	L	V	A	S	P	Q	Y	L	S	S	H	P	Q	P	T	H	A	E	E	L	H	Q	H	Q	L	L	K	G	Y	P	L	L	K	W	Q	L	T	.	.	.	N	S	Q	G	E	T	V	V	N	S	D	R	G	R	F	Q	A	S	A	L	N	V	V	R	S	A	C	S	E	G	L	G	I	T
Template Known Secondary structure																		S				S	S	G	G	G	G	G	G	S						T	T			S					.	.	.		T	T	S										S				S	S										T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure										.	.																												.
Query SS confidence										.	.																												.
Query Sequence		L	I	P	G	Y	M	N	N	.	.	F	N	T	G	Q	V	V	F	R	P	I	A	G	N	V	P	S	I	A	L	L	M	A	W	K	K	G	.	E	M	K	P	A	L	R	D	F	I	A	I	V	Q	E	R	L
Query Conservation										.	.																												.
Alig confidence										.	.																												.
Template Conservation
Template Sequence		L	M	P	D	V	M	L	R	E	F	L	E	D	G	S	L	V	Q	V	L	S	D	W	S	S	N	P	R	D	I	Y	M	L	Y	N	H	K	D	H	Q	P	E	K	V	R	L	F	I	D	F	V	I	G	Y	H
Template Known Secondary structure					G	G	G	T							T	S	S					T	T		B														S	S															S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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