Job Description Q47141 Confidence 99.30% Date Thu Jan 5 12:36:18 GMT 2012 Rank 37 Aligned Residues 180 % Identity 16% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	G	F	V	P	S	A	E	V	N	L	L	P	K	V	L	P	M	F	R	L	R	Q	P	D	T	L	I	E	L	V	S	L	I	T	T	Q	Q	E	E	K	I	R	R	G	E	L	D	V	G	L	M	R	H	P	V	Y	S	P	E	I	D	Y	L	E	L	F	D	E	P	L	V	V	V	L	P	V	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	G	A	.	.	.	.	.	.	.	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T	N
Template Known Secondary structure														T													T	T										S		.	.	.	.	.	.	.					S								S		S			T	T															T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		H	P	L	A	H	E	K	E	I	T	A	A	Q	L	D	G	V	N	F	V	S	T	D	P	V	Y	S	G	S	L	A	P	I	V	K	A	W	F	A	Q	E	N	S	Q	P	N	I	V	Q	V	A	T	N	I	L	V	T	M	N	L	V	G	M	G	L	G	V	T	L	I	P	G	Y	M	N	N	.	.	F	N
Query Conservation																																																																														.	.
Alig confidence				.	.	.	.	.	.	.													.	.	.	.	.	.																																																		.	.
Template Conservation				.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		L	P	.	.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	.	.	.	.	.	.	Q	T	T	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L
Template Known Secondary structure		S		.	.	.	.	.	.	.				G	G	G	G	S		B			.	.	.	.	.	.	B	T	T		T														B		S			B	S	S										T	T			B
Template Predicted Secondary structure				.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		95	.								.	.	.	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		T	G	Q	V	V	F	R	P	I	A	G	N	V	P	S	I	A	L	L	M	A	W	K	K	G	.	E	M	K	P	A	L	R	D	F	I	A	I	V	Q	E	R	L
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		R	G	D	I	Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D	K	L
Template Known Secondary structure		T	T	S																					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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