Phyre 2 alignment of P40874 with c3qj4A

Job Description P40874
Confidence 99.26% Date Thu Jan 5 12:01:17 GMT 2012

Rank 55 Aligned Residues 310

% Identity 12% Template c3qj4A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:renalase; PDBTitle: crystal structure of human renalase (isoform 1)

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	.	.	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E
Query Conservation																								.	.
Alig confidence																								.	.																																																				.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence	A	Q	V	L	I	V	G	A	G	M	T	G	S	L	C	A	A	L	L	R	R	Q	T	G	P	L	Y	L	A	V	W	D	K	A	D	D	S	G	G	R	M	T	T	A	C	S	P	H	N	P	Q	C	T	A	D	L	G	A	Q	Y	I	T	C	T	P	H	Y	A	K	K	H	Q	R	F	Y	D	.	.	.	.
Template Known Secondary structure									S												S												S	S	S	S	S		G	G	G						S	S		T	T					S	S								S	S					T						.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence	D	P	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	L	A	Y	G	V	L	R	P	L	S	S	P	I	E	G	M	V	M	G	D	C	N	F	V	A	P	Q	G	I	S	S	I	I	K	H	Y	L	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S						S				T											T	T		T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																									79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.														.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	K	K	A	I	V	C	A	G	T	W	V	K	D	L	L	P	E	L	P	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	S	G	A	E	V	Y	F	R	H	R	V	T	Q	I	N	L	R	D	D	K	W	E	V	S	K	Q	T	G	S	P	E	Q	F	D	L	I	V	L	T	M	P	V	P	E	I	L	Q	L	Q	G	D	I	T	T	L	I	S	E	C	Q	R	Q	Q	L	E	A	V	S	Y	S	S	R	Y	A	L	G	L	F	Y
Template Known Secondary structure			T					S	S										S	S	S						S	S	S						S						S						T	T		B	S	T					S										T			B
Template Predicted Secondary structure
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence	R	Y	S	V	K	N	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	.	.	.	.	.	.	P	A	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.
Template Conservation
Template Sequence	E	A	G	T	D	V	P	W	A	G	Q	Y	I	T	S	N	P	C	I	R	F	V	S	I	D	N	K	K	R	N	I	E	S	S	I	G	P	S	L	V	I	H	T	T	V	P	F	G	V	T	Y	L	E	H	S	I	E	D	V	Q	E	L	V	F	Q	Q	L	E	N	I	L	P	G	L	P	Q	P	I	A	T
Template Known Secondary structure	S	S					S		S					S	S		S	S											T	T																					T	T	T	S																	S		S					S
Template Predicted Secondary structure
Template SS confidence
	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

	302	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure						.																												.
Query SS confidence						.																												.
Query Sequence	C	L	Y	G	A	.	A	C	T	Y	D	N	S	P	D	E	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	.	G	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q	D
Query Conservation						.																												.
Alig confidence						.																												.
Template Conservation
Template Sequence	K	C	Q	K	W	R	H	S	Q	V	T	N	A	A	A	N	C	P	G	Q	M	T	L	H	H	K	P	F	L	A	C	G	G	D	G	F	T	Q	S	N	F	D	G	C	I	T	S	A	L	C	V	L	E	A	L	K	N
Template Known Secondary structure						T	T		S	B	S	S			S	S	S		S						T	T	T						S	G	G	G	S		S	S																T	T
Template Predicted Secondary structure
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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