Job Description P40874 Confidence 100.00% Date Thu Jan 5 12:01:17 GMT 2012 Rank 8 Aligned Residues 359 % Identity 16% Template c3nyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E
Query Conservation
Alig confidence																																							.	.																.
Template Conservation																																							.	.																.
Template Sequence		I	E	A	D	Y	L	V	I	G	A	G	I	A	G	A	S	T	G	Y	W	L	S	A	H	G	R	V	V	V	L	E	R	E	A	Q	P	G	.	.	Y	H	S	T	G	R	S	A	A	H	Y	T	V	A	Y	.	G	T	P	Q	V	R	A	L	T	A	A	S	R	A	F	F	D	N	P	P	A	G	F	C	E
Template Known Secondary structure												S											T	T	T	S							S	S	S	S	T	T	.	.	S	S	G	G	G	S	S						S	S		.	S	S																S			T	T	S		S
Template Predicted Secondary structure																																							.	.																.
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.			.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.		.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		D	P	I	F	V	R	S	G	V	I	N	L	.	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		H	P	L	L	S	P	R	P	E	M	V	V	D	F	S	D	D	P	E	E	L	R	R	Q	Y	E	S	G	K	A	L	V	P	Q	M	R	L	L	D	A	E	Q	A	C	S	I	V	P	V	L	R	R	D	K	V	F	G	A	T	Y	D	P	T	G	A	D	I	D	T	D	A	L	H	Q	G	Y	L	R	G	I
Template Known Secondary structure		S		S											S	S																		T	T													S	T	T	B		G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		1079	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		K	E	A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	G	T	W	V	K	D	L	L	P	E	.	.	.	.	.	L	P	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N	K
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		R	R	N	Q	G	Q	V	L	C	N	H	E	A	L	E	I	R	R	V	D	G	A	W	E	V	R	C	D	A	G	S	Y	R	A	A	V	L	V	N	A	A	G	A	W	C	D	A	I	A	G	L	A	G	V	R	P	L	G	L	Q	P	K	R	R	S	A	F	I	F	A	P	P	P	G	I	D	C	H	D	W
Template Known Secondary structure				T	T					S	S										T	T							S	S													G	G	G									T																				T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		1159	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C	T	Y	D	N	S	P
Query Conservation
Alig confidence		.	.	.	.																																																										.	.	.	.	.
Template Conservation		.	.	.	.																																																										.	.	.	.	.
Template Sequence		.	.	.	.	P	M	L	V	S	L	D	E	S	F	Y	L	K	P	D	A	G	M	L	L	G	S	P	A	N	A	D	P	V	E	A	H	D	V	Q	P	E	Q	L	D	I	A	T	G	M	Y	L	I	E	E	A	T	T	L	T	I	R	.	.	.	.	.	R	P	E	H	T	W	A	G	L	R	S	F	V	A
Template Known Secondary structure		.	.	.	.						T	T	S	S							T	T														S	S																				B	S					.	.	.	.	.			S											T
Template Predicted Secondary structure		.	.	.	.																																																										.	.	.	.	.
Template SS confidence
						1239	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.						.	.	.	.	1300	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360								.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																																.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.
Query Sequence		D	E	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	G	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q	D	K	K	S	D	.	.	.	.	.	.	.	F	D	L	T	P	F	R	L	S	R	F
Query Conservation																																																.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	D	L	V	A	G	Y	A	A	N	A	E	G	F	F	W	V	A	A	Q	G	G	Y	G	I	Q	T	S	A	A	M	G	E	A	S	A	A	L	I	R	H	Q	P	L	P	A	H	L	R	E	H	G	L	D	E	A	M	L	S	P	R	R	L
Template Known Secondary structure		T	S								T	T	S	T	T								T	T		T	T	T	T													T	T										T	T								G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions