Job Description P40874 Confidence 99.36% Date Thu Jan 5 12:01:17 GMT 2012 Rank 44 Aligned Residues 353 % Identity 16% Template c3nksA_ PDB info PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	.	.	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E	D
Query Conservation																								.	.
Alig confidence																								.	.																																					.	.
Template Conservation																																																														.	.
Template Sequence		T	V	V	V	L	G	G	G	I	S	G	L	A	A	S	Y	H	L	S	R	A	P	C	P	P	K	V	V	L	V	E	S	S	E	R	L	G	G	W	I	R	S	V	R	G	P	N	G	A	I	F	E	L	G	P	R	G	I	R	P	.	.	A	G	A	L	G	A	R	T	L	L	L	V	S	E	L	G	L	D
Template Known Secondary structure									B												T	S	S	S									S	S	S	S	S	B	T	T							T	T	S					S	S				B			.	.															T	T		G
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.																									.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	F	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	V	L	P	V	R	G	D	H	P	A	A	Q	N	R	F	L	Y	V	G	G	A	L	H	A	L	P	T	G	L	R	G	P	S	P	P	F	S	K	P	L	F	W	A	G	L	R	E	L	T	K	P	R	G	K	E	P	D	E	T	V	H	S	F	A	Q	R	R	L	G	P	E	V	A	S	L	A	M	D
Template Known Secondary structure		G	G						T	T	S											T	T								S	S					T	T	S		S		S	S					T	T	T	T	S					S	S			B																	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		138	.	140	.	.	.	.	.	.	.	.	.	150																																																						.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	E	T	D	S	G	F	L	R	S	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	K	T	W	I	Q	L	A	K	E	A	G	C
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	C	R	G	V	F	A	G	N	S	R	E	L	S	I	R	S	C	F	P	S	L	F	Q	A	E	Q	T	H	R	S	I	L	L	G	L	L	L	G	Q	P	D	S	A	L	I	R	Q	A	L	A	E	R	W	S	Q	W	S	L	R	G	G	L	E	M	L	P	Q	A	L	E	T	H	L	T	S	R	G	V
Template Known Secondary structure									S	S		T	T	T	B	B																S																						T	T		S					T	T		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																						.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.													.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	.	.	G	T	W	V	K	D	L	L	P	E	L	P	.	.	.	.	.	.	.	.	.	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N
Query Conservation																																						.	.													.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	L	R	G	Q	P	V	C	G	L	S	L	Q	A	E	G	R	W	K	V	S	L	R	D	S	S	L	E	A	D	H	V	I	S	A	I	P	A	S	V	L	S	E	L	L	P	A	E	A	A	P	L	A	R	A	L	S	A	I	T	A	V	S	V	A	V	V	N	L	Q	Y	Q	G	A	H	L	P	V	Q
Template Known Secondary structure						S										G	G	G							S	S						S						S									S		G	G	G									T														T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.										.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																																																	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.																																																	.	.	.
Query Sequence		K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	.	.	.	.	.	.	.	.	.	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.																																																	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Conservation
Template Sequence		G	F	G	H	L	V	P	S	S	E	D	P	G	V	L	G	I	V	Y	D	S	V	A	F	P	E	Q	D	G	S	P	P	G	L	R	V	T	V	M	L	G	G	S	W	L	Q	T	L	E	A	S	G	C	V	L	S	Q	E	L	F	Q	Q	R	A	Q	E	A	A	A	T	Q	L	G	L	K	E	M	P	S	H
Template Known Secondary structure		S	S						T	T	T		S	S												G	G	G	S	T	T	T	T																			S	S																								S			S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
				302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																							.	.	.	.	.										.
Query SS confidence		.	.																							.	.	.	.	.										.
Query Sequence		.	.	C	L	Y	G	A	A	C	T	Y	D	N	S	P	D	E	D	F	I	I	D	T	L	.	.	.	.	.	P	G	H	D	N	T	L	L	I	.	T	G	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q	D	K	K
Query Conservation		.	.																							.	.	.	.	.										.
Alig confidence		.	.																							.	.	.	.	.										.
Template Conservation
Template Sequence		C	L	V	H	L	H	K	N	C	I	P	Q	Y	T	L	G	H	W	Q	K	L	E	S	A	R	Q	F	L	T	A	H	R	L	P	L	T	L	A	G	A	S	Y	E	G	V	A	V	N	D	C	I	E	S	G	R	Q	A	A	V	S	V	L	G	T	E
Template Known Secondary structure															B	T	T															T	T		S					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.