Job Description P40874 Confidence 99.31% Date Thu Jan 5 12:01:17 GMT 2012 Rank 49 Aligned Residues 354 % Identity 15% Template c3lovA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of putative protoporphyrinogen oxidase2 (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution Resolution 2.06 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.	.																											.	.	.	.	.
Query SS confidence																							.	.																											.	.	.	.	.
Query Sequence		D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	.	.	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	.	.	.	.	.	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R
Query Conservation																							.	.																											.	.	.	.	.
Alig confidence																							.	.																											.	.	.	.	.																	.
Template Conservation																																																																								.
Template Sequence		R	L	V	I	V	G	G	G	I	T	G	L	A	A	A	Y	Y	A	E	R	A	F	P	D	L	N	I	T	L	L	E	A	G	E	R	L	G	G	K	V	A	T	Y	R	E	D	G	F	T	I	E	R	G	P	D	S	Y	V	A	R	K	H	I	L	T	D	L	I	E	A	.	I	G	L	G	E	K	L	V	R
Template Known Secondary structure									B															T	T	S							S	S	S	S	S	B	T	T						S	T	T					S	S						T	T	S	T									.	T	T		G	G	G
Template Predicted Secondary structure																																																																								.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	E	E	D	P	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	T	S	Q	A	F	I	L	D	T	G	G	L	H	P	I	P	K	G	A	V	X	G	I	P	T	D	L	D	L	F	R	Q	T	T	L	L	T	E	E	E	K	Q	E	V	A	D	L	L	L	H	P	S	D	S	L	R	I	P	E	Q	D	I	P	L	G	E	Y	L	R	P	R	L	G	D	A	L	V	E
Template Known Secondary structure												T	T							S	S			T	T			S						T	T		S	S	S														S			T	T					S	S			B
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		157	.	.	160	.	.																																																																.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	A	K	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	A	Q	L	F	N	C	P	V	T
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	I	E	P	L	L	S	G	I	Y	A	G	N	I	D	Q	X	S	T	F	A	T	Y	P	Q	F	V	A	N	E	Q	K	A	G	S	L	F	E	G	X	R	L	X	R	P	T	G	Q	F	L	S	L	E	T	G	L	E	S	L	I	E	R	L	E	E	V	L	E	R	S	E	I	R	L	E	T	P	L	L
Template Known Secondary structure			T							G	G	G				T	T	T	S	B	S	T	T	T												S	S								T					S					T	T														S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence		A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	G	T	W	.	.	.	.	.	.	.	.	.	V	K	D	L	L	P	E	L	P	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N	K	F	P	A	F	T	G	E	L	P	N
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	R	E	D	G	R	Y	R	L	K	T	D	H	G	P	E	Y	A	D	Y	V	L	L	T	I	P	H	P	Q	V	V	Q	L	L	P	D	A	H	L	P	E	L	E	Q	L	T	T	H	S	T	A	T	V	T	X	I	F	D	Q	Q	Q	S	L	P	I	E	G	T	G	F	V	V	N	R	R	A	P	Y
Template Known Secondary structure							T	T							T	T						S						S										T	T	S							T																	S	S		S	S	S	S	S						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																																										.
Query SS confidence												.	.	.	.	.	.																																																										.
Query Sequence		G	D	Q	Y	Y	G	F	P	A	E	.	.	.	.	.	.	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C	T	Y	D	.	N	S	P	D	E	D
Query Conservation												.	.	.	.	.	.																																																										.
Alig confidence												.	.	.	.	.	.																																																										.
Template Conservation
Template Sequence		S	I	T	A	C	T	A	I	D	Q	K	W	N	H	S	A	P	D	H	T	V	L	R	A	F	V	G	R	P	G	N	D	H	L	V	H	E	S	D	E	V	L	Q	Q	A	V	L	Q	D	L	E	K	I	C	G	R	T	L	E	P	K	Q	V	I	I	S	R	L	X	D	G	L	P	A	Y	T	V	G	H	A
Template Known Secondary structure		S												T	T	T		T	T										B	T	T	B		G	G	G	G	S																		S	S					S																T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		318	.	320	.	.	.						.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.										.
Query SS confidence								.	.	.	.	.										.
Query Sequence		F	I	I	D	T	L	.	.	.	.	.	P	G	H	D	N	T	L	L	I	.	T	G	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q	D	K	K
Query Conservation								.	.	.	.	.										.
Alig confidence								.	.	.	.	.										.
Template Conservation
Template Sequence		D	R	I	Q	R	V	R	E	E	V	L	A	Q	Y	P	G	I	Y	L	A	G	L	A	Y	D	G	V	G	L	P	D	C	V	A	S	A	K	T	X	I	E	S	I	E	L	E	Q
Template Known Secondary structure															S	T	T					S	T	T	T	S		S	S																		T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.