Job Description P40874 Confidence 99.67% Date Thu Jan 5 12:01:17 GMT 2012 Rank 24 Aligned Residues 346 % Identity 12% Template c3i6dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		K	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	.	.	.	.	.	.	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		K	K	H	V	V	I	I	G	G	G	I	T	G	L	A	A	A	F	Y	M	E	K	E	I	K	E	K	N	L	P	L	E	L	T	L	V	E	A	S	P	R	V	G	G	K	I	Q	T	V	K	K	D	G	Y	I	I	E	R	G	P	D	S	.	.	.	.	.	.	F	L	E	R	K	K	S	A	P	Q	L	V
Template Known Secondary structure											S															T	T	T	T		S								S	S	S	S	S		T	T							T	T					S	S				.	.	.	.	.	.			T	T		T
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.										.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	N	E	E	D	P	.	.	.	.	.	.	.	.	.	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	L	G	L	E	H	L	L	V	N	N	A	T	G	Q	S	Y	V	L	V	N	R	T	L	H	P	M	P	K	S	G	K	A	R	A	A	M	D	F	I	L	P	A	S	K	T	K	D	D	Q	S	L	G	E	F	F	R	R	R	V	G	D	E	V	V	E	N	L	I	E	P	L	L	S	G	I	Y	A	G
Template Known Secondary structure				T	T			T	T														S	S										S									S				S	S	S	S			B									S								T								T	T		S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
				127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.																																																							.
Query SS confidence		.	.																																																							.
Query Sequence		.	.	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K	E	A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	.	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	G	T	W
Query Conservation		.	.																																																							.
Alig confidence		.	.																																			.	.																			.
Template Conservation																																						.	.
Template Sequence		D	I	D	K	L	S	L	M	S	T	F	P	Q	F	Y	Q	F	Q	T	L	S	T	G	L	Q	T	L	V	E	E	I	E	K	Q	L	K	.	.	L	T	K	V	Y	K	G	T	K	V	T	K	L	S	H	S	G	S	C	Y	S	L	E	L	D	N	G	V	T	L	D	A	D	S	V	I	V	T	A	P	H	K
Template Known Secondary structure			T	T	T	B	B						G	G	G							T	T		T										T			.	.	S						S										S	S	S						S	S	S						S						S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
												204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	K	D	L	L	P	E	L	P	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	.	.	.	.	.	.	.	.	E	N	D	A	L	K	I	G	K	H	N	G
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	G	M	L	S	E	L	P	A	I	S	H	L	K	N	M	H	S	T	S	V	A	N	V	A	L	G	F	P	E	G	S	V	Q	M	E	H	E	G	T	G	F	V	I	S	R	N	S	D	F	A	I	T	A	C	T	W	T	N	K	K	W	P	H	A	A	P	E	G	K	T	L	L	R	A	Y	V	G
Template Known Secondary structure							T	T	T	S	T	T						T														S	S	T	T				S	S		S	S						S	T	T			S												G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																.													.	.	.	.	.										.
Query SS confidence																																																.													.	.	.	.	.										.
Query Sequence		G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C	T	Y	D	.	N	S	P	D	E	D	F	I	I	D	T	L	.	.	.	.	.	P	G	H	D	N	T	L	L	I	.	T	G	L	S	G	H
Query Conservation																																																.													.	.	.	.	.										.
Alig confidence																																																.													.	.	.	.	.										.
Template Conservation
Template Sequence		K	A	G	D	E	S	I	V	D	L	S	D	N	D	I	I	N	I	V	L	E	D	L	K	K	V	M	N	I	N	G	E	P	E	M	T	C	V	T	R	W	H	E	S	M	P	Q	Y	H	V	G	H	K	Q	R	I	K	E	L	R	E	A	L	A	S	A	Y	P	G	V	Y	M	T	G	A	S	F	E	G	V
Template Known Secondary structure			S	S			G	G	G	T	S														G	G	G	S				S			S															B	T	T																S	T	T					S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	P	D	C	I	D	Q	G	K	A	A	V	S	D	A	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions