Job Description P40874 Confidence 99.95% Date Thu Jan 5 12:01:17 GMT 2012 Rank 20 Aligned Residues 306 % Identity 16% Template c3da1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E	D
Query Conservation
Alig confidence																																						.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	D	L	L	V	I	G	G	G	I	T	G	A	G	I	A	L	D	A	Q	V	R	G	I	Q	T	G	L	V	E	X	N	D	F	A	.	.	S	G	T	S	S	R	S	T	K	L	V	H	G	V	G	.	.	.	.	.	.	.	.	.	.	.	K	E	R	A	I	V	Y	E	N	A	P	H	V	T	T	P
Template Known Secondary structure											S												T	T	T								S	S	S	T	T	.	.		S	G	G	G	S	S									.	.	.	.	.	.	.	.	.	.	.											T	T	T
Template Predicted Secondary structure																																						.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K	E
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		E	W	X	L	L	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	R	Y	X	L	N	E	K	Q	T	L	E	K	E	P	L	L	R	.	K	E	N	L	K	G	G	G	I	Y	V	E	Y	R	T	D	D	A	R	L	T	L	E	I	X	K	E	A	V	A
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	S		.		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		100	.	.	.	.	.	.																								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.							.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																														.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.																														.	.	.	.	.	.
Query Sequence		A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	.	.	.	.	.	.	.	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	G	T	W	V	K	D	L	L	P	E	L	P	.	.	.	.	.	.	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R
Query Conservation																								.	.	.	.	.	.	.																														.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	A	V	A	L	N	Y	X	K	V	E	S	F	I	Y	D	Q	G	K	V	V	G	V	V	A	K	D	R	L	T	D	T	T	H	T	I	Y	A	K	K	V	V	N	A	A	G	P	W	V	D	T	L	R	E	K	D	R	S	K	H	G	K	Y	L	K	L	S	K	G	V	H	L	V	V	D	Q	S	R	F
Template Known Secondary structure		T	T						S										T	T										T	T	T																G	G	G							T	T	T				S	S														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	V	K	N	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	P	L	R	Q	A	V	Y	F	D	T	E	S	D	G	R	X	I	F	A	I	P	R	E	G	K	T	Y	I	G	T	T	D	T	F	Y	D	K	D	I	A	S	P	R	X	T	V	E	D	R	D	Y	I	L	A	A	A	N	Y	X	F	P	S	L	R	L	T	A	D	D	V	E	S	S	W	A	G
Template Known Secondary structure		.	.	.	.			S	S							S	S	S										T	T													S		T	T																					T	T					T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	D	N	S	P	D	E	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	G	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q
Query Conservation
Alig confidence																.	.	.	.											.	.	.
Template Conservation																.	.	.	.											.	.	.
Template Sequence		L	R	P	L	I	H	E	D	E	I	F	F	S	D	.	.	.	.	S	G	L	I	S	I	A	G	G	K	.	.	.	L	T	G	Y	R	K	X	A	E	R	T	V	D	A	V	A
Template Known Secondary structure															S	.	.	.	.	S										.	.	.	S	T	T
Template Predicted Secondary structure																.	.	.	.											.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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