Job Description P40874 Confidence 99.49% Date Thu Jan 5 12:01:17 GMT 2012 Rank 33 Aligned Residues 303 % Identity 17% Template c3cgvA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:geranylgeranyl reductase related protein; PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution Resolution 1.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E	D
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	D	V	L	V	V	G	G	G	P	G	G	S	T	A	A	R	Y	A	A	K	Y	G	L	K	T	L	X	I	E	K	R	P	E	I	G	S	P	V	R	C	G	E	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	I	L	N	E	A	D	I	K	A	D	R	S
Template Known Secondary structure											S													T	T								S	S	S	S	T	T		S			S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T	T					T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																				50	.	.	.	.	.	.	.	.	.	60	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	A	N	E	V	K	G	A	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	P	S	E	K	R	P	I	I	L	Q	N	E	V	G	Y	V	L	E	R	D	K	F	D	K	H	L	A	A	L	A	A	K
Template Known Secondary structure		T						S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.																																				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																					.	.	.	.																							.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																							.	.	.	.	.	.
Query Sequence		A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	.	.	.	.	I	V	C	A	G	T	W	V	K	D	L	L	P	E	L	P	V	Q	P	V	R	K	.	.	.	.	.	.	V	F	A	W	Y	Q	A	D	G	R	Y	S	V
Query Conservation																																					.	.	.	.																							.	.	.	.	.	.
Alig confidence																																					.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	A	D	V	W	V	K	S	P	A	L	G	V	I	K	E	N	G	K	V	A	G	A	K	I	R	H	N	N	E	I	V	D	V	R	A	K	X	V	I	A	A	D	G	F	E	S	E	F	G	R	W	A	G	L	K	S	V	I	L	A	R	N	D	I	I	S	A	L	Q	Y	R	X	I	N	V	D	V	D
Template Known Secondary structure			T					S	S										T	T										T	T																T	T								T			T	T				G	G	G											S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C	T	Y	D
Query Conservation
Alig confidence																																				.	.	.																												.	.	.	.	.
Template Conservation																																				.	.	.																												.	.	.	.	.
Template Sequence		P	D	Y	T	D	F	Y	L	G	S	I	A	P	A	G	Y	I	W	V	F	P	K	G	E	G	X	A	N	V	G	I	G	S	S	.	.	.	I	N	W	I	H	N	R	F	E	L	K	N	Y	L	D	R	F	I	E	N	H	P	G	L	K	K	G	.	.	.	.	.	Q	D	I	Q	L	V	T	G	G	V	S
Template Known Secondary structure		T	T							S	T	T	S	T	T										T	T										.	.	.	T	T	T		S															T						T	S	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.																												.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.									.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		N	S	P	D	E	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	G	.	.	.	.	.	.	.	.	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q	D	K	K	S	D	F	D	L	T	P	F	R	L	S	R	F	Q
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.						.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		V	S	K	V	K	X	P	I	T	X	P	G	.	.	.	.	.	.	L	X	L	V	G	D	A	A	R	L	I	D	P	I	T	G	G	G	I	A	N	A	I	V	S	G	X	Y	A	A	Q	V	T	K	E	A	I	E	S	N	D	Y	S	P	Q	X	X	Q	K	Y	E
Template Known Secondary structure							S					T	T	.	.	.	.	.	.					G	G	G	G	T		S		T	T	T																									T			S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions