Return to main results Retrieve Phyre Job Id

Job DescriptionP40874
Confidence100.00%DateThu Jan 5 12:01:17 GMT 2012
Rank5Aligned Residues354
% Identity23%Templatec2gahB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit; PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20..... ....30.........40.........50.........60.........70.........
Predicted Secondary structure 




..

























Query SS confidence 























. .





















































Query Sequence  KYDLIIIGSGSVGAAAGYYATRAG. . LNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNE
Query Conservation    








 


 
  

  
..  
 


         

                   
   
      
     
Alig confidence 























..











..














.























Template Conservation    

 





 


 
  
   
    
 


     .. 


    
      .       
   
      
     
Template Sequence  SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA. . GGNXARNTTIIRSNY. LWDESAGIYEKSLKLWEQLPEDLE
Template Known Secondary structure 

S




SSSTT..
SGGGTS


B



.SSTT
Template Predicted Secondary structure 












..










.



Template SS confidence 















































































   21........30.........40.........50........ .60.........70... ......80.........90.......
 
   80.........90......... 100.........110.........120.........130...... ...140.........150..
Predicted Secondary structure 






..












.....




Query SS confidence 



















. .




































. . . . .















Query Sequence  EDPIFVRSGVINLGPADSTF. . LANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYI. . . . . GLFETDSGFLRSELAI
Query Conservation                      ..                 
                   .....                
Alig confidence 



















..




































.....















Template Conservation          
                                        
                       
      
Template Sequence  YDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVXGATWQPRAGIAKHDHVA
Template Known Secondary structure 




B



STTT




TTS

SS
SSS


TT
BB

Template Predicted Secondary structure 

































Template SS confidence 















































































   98.100.........110.........120.........130.........140.........150.........160.........170.......
 
   153......160.........170.........180... ......190.........200......... 210.........220.......
Predicted Secondary structure 










.




....




Query SS confidence 






























.

























. . . .

















Query Sequence  KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVT. IETADGEYQAKKAIVCAGTWVKDLLP. . . . ELPVQPVRKVFAWYQADG
Query Conservation                                 .             
         
  ....                  
Alig confidence 






























.

























....

















Template Conservation    
       
        
                 
   
  

 
 
     
                        
Template Sequence  WAFARKANEXGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEXAGFELPIQSHPLQALVSELFE
Template Known Secondary structure  TT

S

SSSBTT

GGGT




S
Template Predicted Secondary structure 




























Template SS confidence 















































































   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   228.230.........240.........250.........260.... .....270.........280.........290.........300......
Predicted Secondary structure 



















.

















Query SS confidence 




































.









































Query Sequence  RYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHN. GGQVIHSADERVPFAEVASDGSEAFPFLRNVLPGIGCCLYGA
Query Conservation                                   
   .                                          
Alig confidence 



.......

























.






























.....





Template Conservation      .......                 
    
                    
        
 
   .....      
Template Sequence  PVHP. . . . . . . TVVXSNHIHVYVSQAHKGELVXGAGIDSYNGYGQRGAFHVIQEQXAAAVELFPIFARA. . . . . HVLRTW
Template Known Secondary structure  S


.......STTTT
TTS
SS


SS


T
GGGTT
.....
Template Predicted Secondary structure 



.......































.....
Template SS confidence 















































































   258.260. ........270.........280.........290.........300.........310......... 320.....
 
   307..310.........320.........330.........340.........350.........360.........370.
Predicted Secondary structure 





























Query SS confidence 
































































Query Sequence  ACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRF
Query Conservation   
 
  
 
  
 

            
  
 
   
   
  

  
           
   

Alig confidence 

















.













































Template Conservation   
 
  
 
  
 

   .        
  
 
   

  
  

  
               

Template Sequence  GGIVDTTXDASPIISKTP. IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPHELNKPFSLERF
Template Known Secondary structure  TTS


S.SBT
BTT

STTTS

TTTGGG
TT
Template Predicted Secondary structure 









.


















Template SS confidence 
































































   326...330.........340... ......350.........360.........370.........380.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions