Phyre 2 alignment of P40874 with c2b9yA

Job Description P40874
Confidence 99.22% Date Thu Jan 5 12:01:17 GMT 2012

Rank 60 Aligned Residues 350

% Identity 13% Template c2b9yA_

PDB info PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes

Resolution 2.21 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	L	.	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	S	R	I	A	I	I	G	A	G	P	A	G	L	A	A	G	M	Y	L	E	Q	A	G	F	H	D	Y	T	I	L	E	R	T	D	H	V	G	G	K	C	H	S	P	N	Y	H	G	R	R	Y	E	M	G	A	I	M	G	V	P	S	Y	D	T	I	Q	E	I	M	D	R	T	G	D	K	V	D	G	P	K
Template Known Secondary structure	T									S													T	T									S	S	S		S	S	T	T							T	T					S	S						T	T
Template Predicted Secondary structure
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

																	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.									.	.	.	.	.	110	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E	D	P	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	.	.	.	.	.	.	.	.	H	S	A	E	Q	W	Q
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	R	R	E	F	L	H	E	D	G	E	I	Y	V	P	E	K	D	P	V	R	G	P	Q	V	M	A	A	V	Q	K	L	G	Q	L	L	A	T	K	Y	Q	G	Y	D	A	N	G	H	Y	N	K	V	H	E	D	L	M	L	P	F	D	E	F	L	A	L	N	G	C	E	A	A	R	D	L	W	I	N	P	F
Template Known Secondary structure								T	T	S					G	G	G		T	T																		T	T	T	T	T	T	T	S	S	S	S	S	S				G	G	G	G	S	B								T	T		G	G	G						T	T	T
Template Predicted Secondary structure
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K	E	A	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	A	F	G	Y	G	H	F	D	N	V	P	A	A	Y	V	L	K	Y	L	D	F	V	T	M	M	S	F	A	K	G	D	L	W	T	W	A	D	G	T	Q	A	M	F	E	H	L	N	A	T	L	E	H	P	A	E	R	N	V	D	I	T	R	I	T	R	E	D	G	K	V	H	I	H	T	T	D	W	D	R
Template Known Secondary structure								T	T	T	S	B								S											T						T	T													S	S	S			B		S										T	T							S	S
Template Predicted Secondary structure
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence	Q	A	K	K	A	I	V	C	A	G	T	W	V	K	D	L	L	P	E	L	P	.	.	.	.	.	.	.	.	.	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	E	N	D	A	L	K	I	G	K
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	S	D	V	L	V	L	T	V	P	L	E	K	F	L	D	Y	S	D	A	D	D	D	E	R	E	Y	F	S	K	I	I	H	Q	Q	Y	M	V	D	A	C	L	V	K	E	Y	P	T	I	S	G	Y	V	P	D	N	M	R	P	E	R	L	G	H	V	M	V	Y	Y	H	R	W	A	D	D	P	H	Q	I	I
Template Known Secondary structure			S						S						G	G	G	B											T	T														S	S			S	S					G	G	G	G	S	G	G	G	T	T	S									T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	C	L	Y	G	A	A	C	T	Y	D	N	S	P	D	E	.	.	.	.	.	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	G	L	S	G
Query Conservation																																																							.	.	.	.	.
Alig confidence																																						.																	.	.	.	.	.
Template Conservation																																						.
Template Sequence	T	T	Y	L	L	R	N	H	P	D	Y	A	D	K	T	Q	E	E	C	R	Q	M	V	L	D	D	M	E	T	F	G	H	P	V	E	K	I	.	I	E	E	Q	T	W	Y	Y	F	P	H	V	S	S	E	D	Y	K	A	G	W	Y	E	K	V	E	G	M	Q	G	R	R	N	T	F	Y	A	G	E	I	M	S
Template Known Secondary structure								B	T	T	B																			T	T							.																			T	T								T	T	T	G	G	G					S	G	G	G	S
Template Predicted Secondary structure																																						.
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

	338	.	340	.		.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence	H	G	F	K	.	F	A	S	V	L	G	E	I	A	A	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence	F	G	N	F	D	E	V	C	H	Y	S	K	D	L	V	T
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
	405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions