Phyre 2 alignment of P40874 with c1yvvB

Job Description P40874
Confidence 99.40% Date Thu Jan 5 12:01:17 GMT 2012

Rank 40 Aligned Residues 306

% Identity 11% Template c1yvvB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase, flavin-containing; PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	D	L	I	I	I	G	S	G	S	V	G	A	A	A	G	Y	Y	A	T	R	A	G	L	N	V	L	M	T	D	A	H	M	P	P	H	Q	H	G	S	H	H	G	D	T	R	L	I	R	H	A	Y	G	E	G	E	K	Y	V	P	L	V	L	R	A	Q	T	L	W	D	E	L	S	R	H	N	E	E	D	P
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence	V	P	I	A	I	I	G	T	G	I	A	G	L	S	A	A	Q	A	L	T	A	A	G	H	Q	V	H	L	F	D	K	S	R	G	S	G	G	R	X	S	S	K	R	S	D	A	G	A	L	D	X	G	A	Q	Y	F	T	A	R	.	.	D	R	R	F	A	T	A	V	K	Q	W	Q	A	Q	G	H	V	A	E
Template Known Secondary structure									S													T	T								S	S	S	S	S		G	G	G						T	T	S					S				B				.	.	S														T	S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	F	V	R	S	G	V	I	N	L	G	P	A	D	S	T	F	L	A	N	V	A	H	S	A	E	Q	W	Q	L	N	V	E	K	L	D	A	Q	G	I	M	A	R	W	P	E	I	R	V	P	D	N	Y	I	G	L	F	E	T	D	S	G	F	L	R	S	E	L	A	I	K	T	W	I	Q	L	A	K	E	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	T	P	L	L	Y	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	G	R	L	S	P	S	P	D	E	Q	V	R	W	V	G	K	P	G	X	S	A	I	T	R	A	X	R	G
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S	S	S						S	S	S	T	T								T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.																																											.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence	G	C	A	Q	L	F	N	C	P	V	T	A	I	R	H	D	D	D	G	V	T	I	E	T	A	D	G	E	Y	Q	A	K	K	A	I	V	C	A	G	T	W	V	K	D	L	L	P	E	L	P	.	.	.	.	.	.	.	.	.	V	Q	P	V	R	K	V	F	A	W	Y	Q	A	D	G	R	Y	S	V	K	N
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	X	P	V	S	F	S	C	R	I	T	E	V	F	R	G	E	E	H	W	N	L	L	D	A	E	G	Q	N	H	G	P	F	S	H	V	I	I	A	T	P	A	P	Q	A	S	T	L	L	A	A	A	P	K	L	A	S	V	V	A	G	V	K	X	D	P	T	W	A	V	A	L	A	F	E	T	P	L	Q	T
Template Known Secondary structure	T						S										S	S							T	T	S							S						S						G	G	G	G	T	T									T	T														S	S			S
Template Predicted Secondary structure
Template SS confidence
	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence	K	F	P	A	F	T	G	E	L	P	N	G	D	Q	Y	Y	G	F	P	A	E	N	D	A	L	K	I	G	K	H	N	G	G	Q	V	I	H	S	A	D	E	R	V	P	F	A	E	V	A	S	D	G	S	E	A	F	P	F	L	R	N	V	L	P	G	I	G	C	.	.	.	.	.	C	L	Y	G	A	A	C
Query Conservation																																																																					.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.
Template Conservation
Template Sequence	P	X	Q	G	C	F	V	Q	D	S	P	L	D	W	L	A	R	N	R	S	K	P	E	R	D	D	T	L	D	T	W	I	L	H	A	T	S	Q	W	S	R	Q	N	L	D	A	S	R	E	Q	V	I	E	H	L	H	G	A	F	A	E	L	I	D	C	T	X	P	A	P	V	F	S	L	A	H	R	W	L	Y
Template Known Secondary structure	S								S	S	S							G	G	G	S	T	T				S	S															T	T	T																T	T		S	S						S
Template Predicted Secondary structure
Template SS confidence
	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence	T	Y	D	N	S	P	D	E	D	F	I	I	D	T	L	P	G	H	D	N	T	L	L	I	T	G	.	.	L	S	G	H	G	F	K	F	A	S	V	L	G	E	I	A	A	D	F	A	Q
Query Conservation																											.	.
Alig confidence													.	.											.		.	.
Template Conservation													.	.											.
Template Sequence	A	R	P	A	G	A	H	E	W	G	A	L	.	.	S	D	A	D	L	G	I	Y	V	C	.	G	D	W	C	L	S	G	R	V	E	G	A	W	L	S	G	Q	E	A	A	R	R	L	L
Template Known Secondary structure				S	S					S			.	.			T	T	T	T					.		G	G	G	T	T	S	S
Template Predicted Secondary structure													.	.											.
Template SS confidence
	279	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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