Job Description P0ABJ9 Confidence 5.41% Date Thu Jan 5 11:15:40 GMT 2012 Rank 38 Aligned Residues 175 % Identity 14% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.												.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	M	T	K	F	W	G	K	L	F	G	I	N	F	A	L	G	V	A	T	G	L	T	M	E	F	Q	F	G	.	.	.	.	.	.	.	.	.	.	.	T	N	W	S	Y	Y	S	H	Y	V	G	D	I	F	G	A	P	L	A	I	E	G	L	M	A	F	F	L	E	S	T	F	V	G	L	F	F	F	G
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	A	T	L	Y	F	L	V	L	G	F	L	A	L	I	V	G	S	L	F	G	P	F	Q	A	L	N	Y	G	N	V	D	A	Y	P	L	L	K	R	L	L	P	F	V	Q	S	Y	Y	Q	G	L	T	L	H	G	V	L	N	A	I	V	F	T	Q	L	F	A	Q	A	I	M	V	Y	L	P	A	R	E	L
Template Known Secondary structure																															T	T											S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	R	L	G	K	V	Q	H	M	C	V	T	W	L	V	A	L	G	S	N	L	S	A	L	W	I	L	V	A	N	G	W	M	Q	N	P	I	A	S	D	F	N	F	E	T	M	R	M	E	M	V	S	F	S	E	L	V	L	N	P	V	A	Q	V	K	F	V	H	T	V	A	S	G	Y	V	T	G	A	M
Query Conservation
Alig confidence																															.	.	.	.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	M	R	P	N	M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	.	.	.	.	N	E	A	T	V	L	Y	.	.	.	.	.	.	.	.	.	.	.	T	F	Y	P	P	L	K	G	H	W	A	F	Y	L	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I
Template Known Secondary structure		T					T	T																						T	.	.	.	.	T	S			S		T	.	.	.	.	.	.	.	.	.	.	.	T			T	T	B
Template Predicted Secondary structure																															.	.	.	.								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		198	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	I	L	G	I	S	A	W	Y	M	L	.	K	G	R	D	F	A	F	A	K	R	S	F	A	I	A	A	S	F	G	M	A	A	V	L	S	V	I	V	L	G
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		V	L	D	L	W	R	R	W	K	A	A	N	P	G	K	V	T	P	L	V	T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A
Template Known Secondary structure													S	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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