Job Description P0ABJ9 Confidence 3.08% Date Thu Jan 5 11:15:40 GMT 2012 Rank 77 Aligned Residues 61 % Identity 11% Template c3am6C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:rhodopsin-2; PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum Resolution 3.20 Å

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		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.						.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		R	I	M	V	A	C	G	F	L	L	L	A	I	I	A	L	S	F	W	S	V	I	R	N	R	I	G	E	K	K	W	L	L	R	A	A	L	Y	G	I	P	L	P	W	I	A	V	E	.	.	.	.	.	A	G	W	F	V	A	E	Y	G	R	Q	P	W
Query Conservation																																																		.	.	.	.	.
Alig confidence																																																		.	.	.	.	.
Template Conservation
Template Sequence		T	G	M	I	A	Q	W	I	V	F	A	I	M	A	A	A	A	I	A	F	G	V	A	V	H	F	R	P	L	K	S	A	Y	Y	I	N	I	A	I	C	T	I	A	A	T	A	Y	Y	A	M	A	V	N	Y	Q	D	L	T	M	N	G	E	R	Q	V	V
Template Known Secondary structure																									G	G	G																											T	T	T	S			B	S	S	S	B	B
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions