Job Description P31667 Confidence 28.46% Date Thu Jan 5 11:48:30 GMT 2012 Rank 59 Aligned Residues 98 % Identity 10% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	M	A	C	L	L	S	S	G	Y	A	N	D	R	Q	I	K	G	L	F	N	Y	I	L	Q	T	G	D	A	V	R	F	N	D	F	I	D	G	V	A	E	R	S	P	K	H	K	E	S	L	M	T	I	A	E	R	L	R	Q	E	G	E	Q	S	K	A	L	H	I	A	K	I	M	L	E	S	G	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	I	L	G	L	L	K	A	I	K	F	Y	D	E	T	K	S	S	F	S	S	F	A	F	L	C	I	R	R	E	X	I	S	A	I	R	K	A	N	T	Q	K	E	E	A	Y	L	L	K	E	E	I	E	E	F	K	K	F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S
Template Known Secondary structure																T	T	T	S																																														S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	I	M	R	F	T	G	L	S	E	E	E	L	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I	D	N	T
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions