 |
Job Description | P0AD61 | Confidence | 46.52% | Date | Thu Jan 5 11:20:06 GMT 2012 |
Rank | 178 | Aligned Residues | 139 |
% Identity | 10% | Template | c3jr2D_ |
PDB info |
PDB header:biosynthetic protein | Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; |
PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961
|
Resolution | 1.80 Å |
|
 |
  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
. | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | F | G | C | E | Q | G | V | D | F | V | A | A | S | F | I | R | K | R | S | D | V | I | E | I | R | E | H | L | K | A | H | G | G | E | N | I | H | I | I | S | K | I | E | N | Q | E | G | L | N | N | F | D | E | I | L | E | A | . |
S | D | G | I | M | V | A | R | G | D | L | G | V | E | I | P | V | E | E | V |
Query Conservation |   |
|   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |
|
|   |
|
|   |
|
|
|   |   | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
S | R | X | A | F | E | A | G | A | D | W | I | T | V | S | A | A | A | H | I | A | T | I | A | A | C | K | K | V | A | D | E | L | . |
. |
. |
N | G | E | I | Q | I | E | I | Y | G | N | W | T | X | Q | D | A | K | A | W | V | D | L | G | I | T | Q | A | I | Y | H | R | S | R | D | A | E | L | A | G | I | G | W | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
| S |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | T |
|  |  |  |  |  |
|
| S | S |
|
|  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | T |
|
| S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
. | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
  |
  |   |
257 | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | F | A | Q | K | M | M | I | E | K | C | I | R | A | R | K | V | V | I | T | A | T | Q | M | L | D | S | M | I | K | N | P | R | P | T | R | A | E | A | G | D | V | A | N | A | I | L | D | G | T | D | A | V | M | L | S | G | E | S | A | K | G | K | Y | P | L | E | A | V | S | I | M | A | T | I | C | E |
Query Conservation |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|
|
|
|   |
|
|
|   |
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|   |
|   |
|
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |
|   |   |
Template Sequence |   |
T | D | D | L | D | K | X | R | Q | L | S | A | . |
L | G | I | E | L | S | I | T | G | G | I | V | P | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | I | Y | L | F | E | G | I | K | T | K | T | F | I | A | G | R | A | L | A | G | A | E | G | Q | Q | T | A | A | A | L | R | E | Q | I | D | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . |  | T |
|  |  |  |  |  | S | S |
|
| G | G | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | G | G | G | T | T | S |
|  |  |  |  |  |  | S | G | G | G | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
150 | . | . | . | . | . | . | . | . | . | 160 | . | |
. | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|