Job Description P0AD61 Confidence 41.51% Date Thu Jan 5 11:20:06 GMT 2012 Rank 210 Aligned Residues 123 % Identity 20% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query Sequence		K	Q	D	L	I	F	G	C	E	Q	G	V	D	F	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	I	R	K	R	S	D	V	I	E	I	R	E	H	L	K	A	H	G	G	E	N	I	H	I	I	S	K	I	.	.	.	.	.	.	.	E	N	Q	E	G	L	N	N	F	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.											.	.	.	.	.	.	.
Template Conservation																																																					.	.
Template Sequence		A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	.	.	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V
Template Known Secondary structure											T	T		S										S							T		G	G	G	G	G	G														T	.	.	T		S	S								S		B	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		232	.	.	.	.	.			.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure								.	.						.	.	.	.																													.
Query SS confidence								.	.						.	.	.	.																													.
Query Sequence		E	I	L	E	A	S	.	.	D	G	I	M	V	.	.	.	.	A	R	G	D	L	G	V	E	I	P	V	E	E	V	I	F	A	Q	K	M	M	I	E	K	C	I	R	A	.	R	K	V	V	I	T	A	T	Q	M	L	D	S	M	I	K	N	P	R	P	T	R	A	E	A	G	D	V	A	N	A	I	L	D
Query Conservation								.	.						.	.	.	.																													.
Alig confidence								.	.						.	.	.	.																													.							.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	.	.	.	.	.	.	.	.	.	N	G	G	I	R	S	L	E	E	A	L	F	.	.	.	.	H	L	K
Template Known Secondary structure							T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S					.	.	.	.	.	.	.	.	.		S	S			S							.	.	.	.			T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.					.	.	.
		305	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	D	A	V	M	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	D	G	V	X	L	G
Template Known Secondary structure		T	S	S					S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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