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Job DescriptionP0AD61
Confidence100.00%DateThu Jan 5 11:20:06 GMT 2012
Rank3Aligned Residues469
% Identity49%Templatec1t5aB_
PDB info PDB header:transferaseChain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50........ .60.........70....
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Query Sequence  MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTG. . . . . . KTAAILLDTKGPEIRT
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Template Sequence  ARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRT
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S

TTT

T

TTSS
TTTT
TTT






S
B
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   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   75....80 .........90.........100 .........110.........120.........130.........140.........150
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Query Sequence  MKLEGG. . NDVSLKAGQTFTFTTDKSVI. . GNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNG
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Template Sequence  GLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGG
Template Known Secondary structure 

BSSSSS


TT


GGGTT
BBTTBS
SGGGGT

TT
TTTT
SS
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   122.......130.........140.........150.........160.........170.........180.........190.........200.
 
   151........160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  DLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNF
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Template Sequence  SLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG. KNIKIISKIENHEGVRRF
Template Known Secondary structure 
SS

SS





SS
TT
STT

STGGG.TTS
ST
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   202.......210.........220.........230.........240.........250.........260.. .......270.........280
 
   231........240.........250.........260.........270.........280.........290.........300.........310
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Query Sequence  DEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVM
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Template Sequence  DEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIM
Template Known Secondary structure  SSS
GGGT

SSTTGGGGT
SS

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   281........290.........300.........310.........320.........330.........340.........350.........360
 
   311........320.........330.........340......... 350.........360.........370.........380......
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Query Sequence  LSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDN. . . . RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARA
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Template Sequence  LSGETAKGDYPLEAVRMQNLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQ
Template Known Secondary structure  ST
S
S
S




T
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   361........370.........380.........390.........400.........410.........420.........430.........440
 
   387..390.........400.........410.........420.. .......430.........440.........450.........460
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Query Sequence  VRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKE. . . . . . ITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSG
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Template Sequence  VARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSG
Template Known Secondary structure  TT

SS
S
GGGSTT

S


SSTS

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   441........450.........460.........470.........480.........490.........500.........510.........520
 
   461........470
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Query Sequence  TTNTASVHVL
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Template Sequence  FTNTMRVVPV
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   521........530
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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