Job Description P0AD61 Confidence 46.75% Date Thu Jan 5 11:20:06 GMT 2012 Rank 175 Aligned Residues 142 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		171	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.																.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	K	D	K	Q	D	L	I	F	G	C	E	.	Q	G	V	D	F	V	A	A	S	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	R	S	D	V	I	E	I	R	E	H	L	K	A	H	G	G	E	N	I	H	I	I	S	K	I	E	N	Q	E	G	L	N	N	F	D	E	I	L
Query Conservation															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.													.	.
Template Conservation																																																										.	.													.	.
Template Sequence		N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q	A	.	.	V	Q	I	P	F	F	A	K	L	T	P	N	.	.	V	T	D	I	V	S	I	A
Template Known Secondary structure																T	T		S										S	S	G	G	G	G	T		T																					.	.		S	S								S		.	.	S	S
Template Predicted Secondary structure																																																										.	.													.	.
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.			.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.
		235	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		E	A	S	.	.	.	.	.	D	G	I	M	V	A	R	G	D	L	G	V	E	I	P	V	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	F	A	Q	K	M	M	I	E	K	C	I	R	A	.	R	K	V	V	I	T	A	T	Q	M	L	D	S	M	I
Query Conservation					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	.	.	.
Template Known Secondary structure								T		S														B		T	T	S		B	S	S		B	T	T	T	T	B								S	G	G	G															S	T	T							S	S			S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	P	R	P	T	R	A	E	A	G	D	V	A	N	A	I	L	D	G	T	D	A	V	M	L	S	G	E	S	A	K	G	K	Y	P	L	E	A	V	S	I	M	A	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	.	.	S	A	V	Q	N	Q	D	F	T	V	I	Q	D	Y	C	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										T	T		S					S	.	.					T	S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
											799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.			.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions