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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank2Aligned Residues1071
% Identity79%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKLLDRFRYFKQKGETFADGHGQVMHSNRDWEDSYRQRWQFDKIVRSTHGVNCTGSCSWKIYVKNGLVTWEIQQTDYPRT
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Template Sequence  SKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRT
Template Known Secondary structure 
GGGTGGGTTTT



GGG

S


SSSS



TT


S


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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  RPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIELWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRS
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Template Sequence  RPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRS
Template Known Secondary structure 
TTS


TT


TGGGGGTSTTB

S
TT
SST
TTTTSS

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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  NWQELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLPPASPMTWGEQTDVPES
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Template Sequence  SWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPES
Template Known Secondary structure 
T
GGG


GGGST


TTTTT
S
TS
S




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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLD
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Template Sequence  ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLD
Template Known Secondary structure  TT
SS

SGGGGGGT

SS

TSS


TT
TTT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  NPSDYFINYCRRYSDMPMLVMLEPRDDGSYVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGK
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Template Sequence  NPSQYFTDYVRRYTDMPMLVMLEER. DGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGK
Template Known Secondary structure  S

BSTTB
.SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S
Template Predicted Secondary structure 













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   321........330.........340..... ....350.........360.........370.........380.........390.........
 
   402... ....410.........420.........430.........440.........450.........460.........470.........
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Query Sequence  WNLE. . SIAAGTETELSLTLLGQHDAVAGVAFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLA
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Template Sequence  WNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLA
Template Known Secondary structure 
S
SSBBTTT

B

B



TTS
S

TT


TTS





SBTTS
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   400.........410.........420.........430.........440.........450.........460.........470.........
 
   480.........490.........500.........510.........520.........530.........540.........550.........
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Query Sequence  NYGLDRGLEDENSAKDYAEIKPYTPAWGEQITGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMIN
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Template Sequence  NYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLIN
Template Known Secondary structure  TTB

SS

TTSBSSTTS

TT



TS

TSTT
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   480.........490.........500.........510.........520.........530.........540.........550.........
 
   560.........570.........580.........590.........600.........610.........620.........630.........
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Query Sequence  MLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYS
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Template Sequence  MLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYT
Template Known Secondary structure  TT
TTSTT

SS



SSTTTT
S


TTGGGG



SGGGS
TTS
GGGS
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   560.........570.........580.........590.........600.........610.........620.........630.........
 
   640.........650.........660.........670.........680.........690.........700.........710.........
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Query Sequence  GHLIDFNVRAERMGWLPSAPQLGRNPLGIKAEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGS
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Template Conservation               

 
  
                                               
  

   
 
 
Template Sequence  GHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGS
Template Known Secondary structure  S
TTSS

SS
BSS
TTSTTS
TSS
BGGG
TTSSSSS

S

TTTT
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   640.........650.........660.........670.........680.........690.........700.........710.........
 
   720.........730.........740.........750.........760.........770.........780.........790.........
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Query Sequence  SGKGHEYMQKYLLGTESGIQGEELGASDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNT
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Template Sequence  SGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNT
Template Known Secondary structure  T
SSTT
S




S

TTTTT



SSS


SS





SSB

T
SB

TTSS

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   720.........730.........740.........750.........760.........770.........780.........790.........
 
   800.........810.........820.........830.........840.........850.........860.........870.........
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Query Sequence  SDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPG
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Template Sequence  SDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPG
Template Known Secondary structure 
SSSS

SS

STT
B
TTTT




TTSGGG


SSS


GGGTSS


BT
Template Predicted Secondary structure 













































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   800.........810.........820.........830.........840.........850.........860.........870.........
 
   880.........890.........900.........910.........920.........930.........940.........950.........
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Query Sequence  KTAPNIVAVERDYPATYERFTSLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALA
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Template Sequence  KTAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLA
Template Known Secondary structure  TTB
GGGTB

TT
TT


B

SSTTTTSBB

S
Template Predicted Secondary structure 














































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   880.........890.........900.........910.........920.........930.........940.........950.........
 
   960.........970.........980.........990.........1000.........1010.........1020.........1030.........
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Query Sequence  PETNGHVAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLS
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Template Conservation                     
     
                        
           
           

 
 
Template Sequence  PETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLS
Template Known Secondary structure  TTTBSS

GGGTGGGTT
B

S




TTSSS


SSS


TT



SSTT
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   960.........970.........980.........990.........1000.........1010.........1020.........1030.........
 
   1040.........1050.........1060.........1070...
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Query Sequence  GRQQLYQDHPWMRAFGESLVAYRPPIDTRSVSEM
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Template Conservation 

  

 

      

 
               
Template Sequence  GRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEV
Template Known Secondary structure  SSB




STT
SS










STTT
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   1040.........1050.........1060.........1070...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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