Return to main results Retrieve Phyre Job Id

Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank21Aligned Residues655
% Identity19%Templated1ogya2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution3.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100.........110.........120...
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  KIVRSTHGVNCTGSCSWKIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIELWR
Query Conservation    
      

   
   
 



 
       
 
    
 
    
 
 

 
    

 
 





 
      
 
Alig confidence 






.































.......
























........
Template Conservation 
   
 
.  
   
 
 
 
 

 

 
 
    
 
 
.......  
 

       
 



  

 
........
Template Sequence  RWSKAPC. RFCGTGCGVMVGTRDGQVVATHGDTQAEVNRG. . . . . . . LNCVKGYFLSKIMYGEDRLTTPLLR. . . . . . . .
Template Known Secondary structure 
.SS
SS

TT
TT
TTTSS.......


GGGGSTT
TT


S
S........
Template Predicted Secondary structure 

.



















.......







........
Template SS confidence 















































































   13...... 20.........30.........40.........50. ........60.........70......
 
   124.....130.........140.........150.. .......160.........170.........180.........190.........200
Predicted Secondary structure 




























...














Query SS confidence 




























. . .















































Query Sequence  EALKQHSDPVLAWASIMNDPQKCLSYKQV. . . RGRGGFIRSNWQELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSY
Query Conservation                             
 ...

 
 
 








 

 

      


 

              
Alig confidence  ..........................


...















































Template Conservation  .......................... 
    

 
    






  

  
       
   
              
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . MKDGVYHKEGEFAPVSWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWTIWEGY
Template Known Secondary structure  ..........................
SSS


TT




T
GGG
TTS
Template Predicted Secondary structure  ..........................




















Template SS confidence 















































































   77..80.........90.........100.........110.........120.........130
 
   201........210.........220..... ....230.........240.........250.........260.........270.... ..
Predicted Secondary structure 













..
















..

Query SS confidence 
























. .
















































. .

Query Sequence  AAGTRYLSLLGGTCLSFYDWYCDLP. . PASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYK. . GT
Query Conservation      
     
              ..       
         
  

  

 

 
 


         


 
..

Alig confidence 
























..
















































..

Template Conservation            
          
            
         
   

 

  
 
              
     
 
Template Sequence  AASKLMRAGFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWSRLTDRRLSHEHV
Template Known Secondary structure  TTS



TTSS
S
SS
TT
SS

SSTT
Template Predicted Secondary structure 






























Template SS confidence 















































































   131........140.........150.........160.........170.........180.........190.........200.........210
 
   277..280.........290.........300.........310.........320.........330.........340.........350......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  KTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGSYVPGRM
Query Conservation 







 
 

  

 








 

 


  


 
 


       


  


 



  
         
  
Alig confidence 













































......















............
Template Conservation 






  
 

  

  
 





 

 

    

     
 ...... 

   
         ............
Template Sequence  RVAVLSTFTHRSSDLSDTPIIFRPGTDRAILNYIAHHIISTGRVNR. . . . . . DFVDRHTNFALGATDI. . . . . . . . . . . .
Template Known Secondary structure  SS

GGGGS
S

TTTTT


......

SS
............
Template Predicted Secondary structure 
















......







............
Template SS confidence 















































































   211........220.........230.........240.........250...... ...260.........270..
 
   357..360.........370.........380.........390.........400.........410.........420.........430......
Predicted Secondary structure 









































































Query SS confidence 















































































Query Sequence  IRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGVAFPYFGG
Query Conservation 

  
               

 
  
    
    
                                           
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   437..440.........450.........460.........470.........480.........490.........500.........510......
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  IENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGEQITGVPRQ
Query Conservation                         
   

  
 
 





                        



 

 






Alig confidence  ..........

































..................

















Template Conservation  ..........                           
  
   ..................    


  
 



   
Template Sequence  . . . . . . . . . . GYGLRPEHQLQLAAKGAADAGAMTPTDFETFAAL. . . . . . . . . . . . . . . . . . VSEYTLEKAAEISGVEPA
Template Known Secondary structure  ..........
TT

TTSS
TT
SS
S


B

..................TS



Template Predicted Secondary structure  ..........


























..................





Template SS confidence 















































































   273......280.........290.........300...... ...310.........320....
 
   517..520.........530.........540.........550.........560.........570.........580.........590.... .
Predicted Secondary structure 












































.
Query SS confidence 













































































.
Query Sequence  YIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAF. A
Query Conservation   
  


  
     
   
 
  
 
     

    

   
  





 



     
        
      . 
Alig confidence 












....







































.........











.
Template Conservation   
  

   
   ....       
 
      
     

  
  
 
  
  
 
.........     
  
  
  
Template Sequence  LLEELAELYADPD. . . . RKWMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNS. . . . . . . . . PFSLTGQPFACGTA
Template Known Secondary structure  TTSTT....S
SSSTTT

SBTTB.........


STTTTTT
Template Predicted Secondary structure 

....
















.........











Template SS confidence 















































































   325....330....... ..340.........350.........360.........370....... ..380.........390.
 
   596...600.........610.........620.........630.........640.........650.........660.........670.....
Predicted Secondary structure 












































































Query SS confidence 















































































Query Sequence  LDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIKAEADKA
Query Conservation   
         
                       
                     
  
  
                
Alig confidence 





























..................................................
Template Conservation            
                   ..................................................
Template Sequence  REVGTFAHRLPADMVVTNPEHRAHAEEIWK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
STTTTTSS
TT..................................................
Template Predicted Secondary structure 



















..................................................
Template SS confidence 















































































   392.......400.........410.........420.
 
   676...680.........690.........700.........710.........720.........730.........740.........750.....
Predicted Secondary structure 

























































Query SS confidence 















































































Query Sequence  GLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEELGASDGIKPEEVE
Query Conservation                                

 
 
   
   
   
  
  
       
                  
Alig confidence  .....











































..............................
Template Conservation  .....                       
 

 
     

        .............................. 
Template Sequence  . . . . . LPAGLLPDWVGAHAVEQDRKLHDGEINFYWVQVNNNMQAAPNID. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Q
Template Known Secondary structure  .....

TT
S

S



TS

S

STT

..............................
Template Predicted Secondary structure  .....























..............................
Template SS confidence 















































































   422.......430.........440.........450.........460..... .
 
   756...760.........770.........780.........790.........800.........810.........820.........830.....
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  WQTAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQ
Query Conservation          





  
  

 

 









  

 
   
     
    




 



 
 

   





 
Alig confidence 








































.





































Template Conservation               
  
   
 

  





 
   
  
.               
 
 

 
 
 

   

 


 
Template Sequence  ETYPGYRNPENFIVVSDAYPTVTGRAADLVLPAAMWVEKEG. AYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKRFTT
Template Known Secondary structure 


TT
SS

TSSB

GGGS
.
TTS
B
S

STT
B
TT

Template Predicted Secondary structure 



















.


















Template SS confidence 















































































   467..470.........480.........490.........500....... ..510.........520.........530.........540.....
 
   836...840.........850.........860.........870.........880.........890.........900.........910..
Predicted Secondary structure 



























































...
Query SS confidence 












































































. . .
Query Sequence  VCVGHLGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFTSLGPLMDKLGNG. . .
Query Conservation            
        
            

   
     
           

          
         ...
Alig confidence 


..







































































...
Template Conservation     ..                                                                           
Template Sequence  DEV. . WPEEILSAAPAYRGKTLFEVLFANGSVDRFPASDVNPDHANHEAALFGFYPQKGLFEEYAAFGRGHGHDLAPFDT
Template Known Secondary structure  ..S

SSSSS

TTTTTT
SSSSS
SBSSSS
SSSB
SSSB
TTSSSSS




TT
Template Predicted Secondary structure 


..















































Template SS confidence 















































































   546.. .550.........560.........570.........580.........590.........600.........610.........620...
 
   913......920.........930.........940.........950.........960.........970.........980.........
Predicted Secondary structure  ...




































































Query SS confidence  . . .












































































Query Sequence  . . . GKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGHVAVKAWQALGEITGREHTHLALHK
Query Conservation  ...  
                                                
                         
Alig confidence  ...


















..........................................................
Template Conservation           
            ..........................................................
Template Sequence  YHEVRGLHWPVVEGEETRWRYR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS
S

BTTB

SSSSB..........................................................
Template Predicted Secondary structure 
















..........................................................
Template SS confidence 















































































   624.....630.........640.....
 
   990.........1000.........1010.........1020.........1030.........1040.........1050.........1060.......
Predicted Secondary structure 




































































Query SS confidence 













































































Query Sequence  EDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLSGRQQLYQDHPWMRAFGESLVAYRPPIDT
Query Conservation               
      
   
       
 
         
  
 


 
 
         
  

   
    
Alig confidence  ..............................



























............







Template Conservation  ..............................                    
       ............   
  
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGFDPYVKPGEGLRFYGKPDGRAVILGV. . . . . . . . . . . . PYEPPAES
Template Known Secondary structure  ..............................BTTBTTS
SS
SB

TTSSS


............




S

Template Predicted Secondary structure  ..............................




















............







Template SS confidence 













































































   646...650.........660.........670... ......680.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions