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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank16Aligned Residues761
% Identity18%Templated1h0ha2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.... .....70.........80.........90.........100.........110.........120.
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Query Sequence  KIVRSTHGVNCTGSCSWKIYV. . KNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIEL
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Template Sequence  KQTTSVCCY. CSVGCGLIVHTDKKTNRAINVEGDPDHPINEG. . . . . . . SLCAKGASTWQLAENERRPANPLYR. . . . . .
Template Known Secondary structure 
SS.BTT


TTT


TT
TTTTT.......


TS
TTS
SS
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   11........ 20.........30.........40.........50. ........60.........70......
 
   122.......130.........140.........150.........160.........170.........180..... ....
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Query Sequence  WREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKTYGPDR. . . . . . . . . . . . VAGF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . AP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASV
Template Known Secondary structure  ............................
T..T
SS



TTS

S
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   77. .80.........90.........100.........110.........120......
 
   190.........200.........210......... 220.........230.........240.........250.........260........
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Query Sequence  SPIPAMSMVSYAAGTRYLSLLGGTCLSFYD. WYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFF
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Template Sequence  GSAAMDNEECW. IYQAWLRSLGLFYIEHQARIHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWV
Template Known Secondary structure 

TTS
.TTB


GGG

S

S
SS
TGGGGG
SS

STT
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   127..130....... ..140.........150.........160.........170.........180.........190.........200.....
 
   269270.........280.........290.........300.........310.........320.........330.........340........
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Query Sequence  TEVRYKGTKTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDD
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Template Sequence  MRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFK. . . . . . DYVVNYTNASFIVGEGFAFE
Template Known Secondary structure  TT

SS

TTGGG
S


TT
TT
S
......BGGGBBB
TT

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   207..210.........220.........230.........240.........250.........260 .........270.........280
 
   349350.........360.........370.........380.........390.........400.........410.........420........
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Query Sequence  GSYVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAG
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Template Sequence  EGLFAG. . . . . . . YNKETRKYDKSKWGFERDEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTT.......TTTT
GGGG
B
B
TT...............................................
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   281..... ...290.........300......
 
   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  VAFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNPKRDETLKHPRCVFQIMKKHY. . . . . . . . . . . . . . . . . . ERYDLDKIS
Template Known Secondary structure  ..............................S
B
B
TTS
STTB..................TT

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   307..310.........320......... 330........
 
   509510.........520.........530.........540.........550.........560.........570.........580........
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Query Sequence  QITGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTG
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Template Sequence  AICGTPKELILKVYDAYCATGK. PDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGG. . . . . . . . . VNALRG
Template Known Secondary structure 


GGGS.TT





SSTT
SSSTT
S.........

S
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   339340.........350.........360 .........370.........380.........390.........400.. ......
 
   589590.........600.........610.........620.........630.........640.........650.........660........
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Query Sequence  WLPLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGI
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Template Sequence  EANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDAD. . . . . . . . . .
Template Known Secondary structure  BTTTT
BTTTTT

BTT

S





TT


GGGG
TTS
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   409410.........420.........430.........440.........450.........460.........470........
 
   669670.........680.........690.........700.........710.........720.........730.........740........
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Query Sequence  KAEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEELGASDG
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Template Sequence  . . . . . . . LNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSN. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .......S

B
TT


STT


S

SSS........................
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   479480.........490.........500.........510.........520.......
 
   749750.........760.........770.........780. ........790.........800.........810.....
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Query Sequence  IKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCLF. . . . . . . . . . . . . SDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDP
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Template Sequence  . . . . . . . . KTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEG. SISNSGRWMQWRYVGPEP
Template Known Secondary structure  ........TT
SSS

TTTTGGGSTT

GGG


B

GGG

.
TT


SS

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   528.530.........540.........550.........560.........570.........580 .........590........
 
   816...820.........830.........840.........850.........860.... .....870.........880...
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Query Sequence  AWESRSDWEIYKGIAKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPC. . . . . . . . . . . . EVLDWRKGECDLIPGKTAP
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Template Sequence  RKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTK. LKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIA
Template Known Secondary structure 
TT
B
S
TT

.S
GGGGB
TTS
B

BBSS
TT
TT
B
S
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   599600.........610.........620.........630... ......640.........650.........660.........670.......
 
   884.....890.........900.........910.........920.........930.........940.........950.........960...
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Query Sequence  NIVAVERDYPATYERFTSLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETN
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Template Sequence  TFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKT. . QTDMQAKIGLYPGWTWAWPVNRRIIYNR. . . ASVDLNGKPYAP
Template Known Secondary structure 
GGG

TTS
B

SSGGGTTSTTGGG
B


..

T

TTBSTTTT
SSTTGG...GGB
TTS
BS
G
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   678.680.........690.........700.........710.. .......720.........730.........740 .........750..
 
   964.....970.........980.........990.........1000.........1010.........1020.........1030.........
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Query Sequence  GHVAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLS
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Template Sequence  EKAVVEWNAAEKKWVG. DVPDGPWPPQADKEKGKR. . . . . . . . . . . AFIMKPEGYAYLYGP. . . . GREDGPLPEYY
Template Known Secondary structure  GG
STTTT.S

SS
S

TT
TTT


...........S
TTSSSS
B
SS
T....TSTT
SS



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   753......760........ .770.........780...... ...790.........800. ........810..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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