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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank26Aligned Residues576
% Identity20%Templated1g8ka2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.64

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60........ .70.........80
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Query Sequence  KIVRSTHGVNCTGSCSWKIYVKNGL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VTWEIQQTDYPR
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Template Sequence  QRTNMTCHF. CIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMVVPDKACVV
Template Known Secondary structure 
SS.BTT

TT



SSGGGBTT


TTS


TTS



GGG
TTS

TT
TT
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   15....20... ......30.........40.........50.........60.........70.........80.........90...
 
   81........90.........100...... ...110.........120.........130.........140.........150.....
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Query Sequence  TRPDLPNHEPRGCPRGASYSWYLYSA. . . . . NRLKYPLIRKRLIELWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGR
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Template Sequence  NSG. . . . . . . LSSTRGGKMASYMYTPTGDGKERLSAPRLY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AA. . . .
Template Known Secondary structure  TTT.......


TTGGGGGGGS

SSSTTTT


S
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S....
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   94.. ...100.........110.........120...... ..
 
   156...160.........170.........180.........190 .........200.........210.........220..... ....230
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Query Sequence  GGFIRSNWQELNQLIAAANVWTIKTYGPDRVAGFS. . . . PIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLP. PASPM
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Template Sequence  DEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSCFDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATR
Template Known Secondary structure  SS

T
GGG


SSTT
STTT



TTBSSS

TT
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   129130.........140.........150.........160.........170.........180.........190.........200........
 
   231........240.........250.........260..... ....270.........280.........290...
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Query Sequence  TWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDA. . . . . . . . . . . . . . . . . HFFTEVRYKGTKTIAITPDYSEVAKLCD
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Template Sequence  EMGIGELNNAYEDAQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIAR
Template Known Secondary structure  TT

S

S

SS

STTTT
TT






SS

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   209210.........220.........230.........240.........250.........260.........270.........280........
 
   294. ....300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  QW. . . . . . . . LAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGSYVPGRMIRASDLVDG
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Template Sequence  HVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWIDK. . . . . . PFIEAHTKG. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGG


TT
T
S
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   289290.........300.........310.........320..... ....330....
 
   366...370.........380.........390.........400.........410.........420.........430.........440.....
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Query Sequence  LGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGVAFPYFGGIENPHFRSV
Query Conservation             

 
  
    
    
                                                    
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
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   446...450.........460.........470.........480.........490.........500.........510.........520.....
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Query Sequence  KHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGEQITGVPRQYIETIAREF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . FDDAVK. . . . . . . . . . . . . . . . . . . TNRLSLDECSNITGVPVDMLKRAAEWS
Template Known Secondary structure  ...............................................T





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   335....340 .........350.........360.......
 
   526...530 .........540.........550.........560.........570.........580.........590.........600....
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Query Sequence  ADTAH. KTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQ
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Template Sequence  YKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDLVIATHNVGRRGTG. . . . . . . . . CVRMGGHQEGYTRPPYPGDKKI
Template Known Secondary structure  S

TTS




TSTTTT
SSSTT

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SB
B




S
SS

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   368.370.........380.........390.........400.........410...... ...420.........430........
 
   605....610.........620.........630.........640.........650.........660.........670.........680....
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Query Sequence  MNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIKAEADKAGLSPTEFTA
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Template Sequence  YIDQELI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   439440.....
 
   685....690.........700.........710.........720...... ...730.........740.........750......
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Query Sequence  QALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEY. . . . . . . . MQKYLLGTESGIQGEELGASDGIKPEEVEW
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Template Sequence  . . . . . . . . . . . . . . . . . . KGKGRIMTWWGCNNFQTSNNAQALREAILQRSAIVKQAMQKARGATTEEMVD. . . . . . . . . .
Template Known Secondary structure  ..................TT

SS

STTT
SS

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   446...450.........460.........470.........480.........490.......
 
   757..760...... ...770.........780.........790.........800.........810.........820.........830.....
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Query Sequence  QTAAIEGKLD. LLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQ
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Template Sequence  VIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNL. TSMNGERRIRLSEKFMDPPGTAMADCLIAARIANALRD
Template Known Secondary structure  TTT

SS

GGGGT
SB

BTTB
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TT



S

STT
B
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   498.500.........510.........520.........530........ .540.........550.........560.........570......
 
   836...840.........850.........860.........870.........880.........890.........900.........910.....
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Query Sequence  VCVGHLGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFTSLGPLMDKLGNGGKG
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Template Sequence  MYQKDGKAEMAAQFEGFDWKTEEDAFNDGFRRAGQP. . . . . . . GAPAIDSQGGSTGHLVTYDRLRKSGNNGVQ. . . . . . .
Template Known Secondary structure  TT
T
S


SSTGGGTT
T.......T



TTGGGGGG

GGG
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   577..580.........590.........600.........610.. .......620.........630.........640..
 
   916...920.........930.........940.........950.........960.........970.........980.........990.....
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Query Sequence  ISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGHVAVKAWQALGEITGREHTHLALHKEDEKIR
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   996...1000.........1010.........1020.........1030.........1040.......
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Query Sequence  FRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLSGRQQLYQD
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Template Sequence  . . . . . . . . . . . . . . . . LPVVSWDESKGLVGTEMLYTEGKFDTDDGKAHFKPA
Template Known Secondary structure  ................SS

TTT

S
S
TTS

SSTTSS



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   643......650.........660.........670........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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