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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank25Aligned Residues589
% Identity25%Templated1eu1a2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80.........90.........100.........110.........120.......
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Query Sequence  STHGVNCTGSCSWKIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIELWREALK
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Template Sequence  EVMSG. CHWGV. FKARVENGRAVAFEPWDKDPAPSH. . . . . . . QLPGVL. . . . DSIYSPTRIKYPMVRREFL. . . . . . . .
Template Known Secondary structure  .TT.TT
TT
SS

T.......T....TTTSTTB

S
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   7..10. ..... ...20.........30.........40 ...... ...50.........60.....
 
   128.130.........140.........150.........160.........170.........180.........190.. .......200...
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Query Sequence  QHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKTYGPDRVAGFSPI. . . . PAMSMVSYAAG
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Template Sequence  . . . . . . . . . . . . . . . EKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMR
Template Known Secondary structure  ...............GGGS
GGGTTSS



GGG









SS

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   66...70.........80.........90.........100.........110.........120.........130
 
   204.....210.........220.........230.... .....240.........250.........260.. .......270..
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Query Sequence  TRYLSLLGGTCLSFYDWYCDLPPASPMTWGE. . . . QTDVPESADWYNSSYIIAWGSNVPQTRT. . . . . . . PDAHFFTEVR
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Template Conservation                               
             
   

 

  
 
   
                 
 
Template Sequence  RALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKAL
Template Known Secondary structure  T

BS
SSSTTTSS

TTS

S

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TT

SSB


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   131........140.........150.........160.........170.........180.........190.........200.........210
 
   273......280.........290 .........300.........310.........320.........330.........340.........350.
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Query Sequence  YKGTKTIAITPDYSEVAK. LCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGSY
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Template Sequence  KEKGTRVIINPVRTETADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDK. . . . . . DFLENCTTG. . . . . . . . . . . . . .
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   211........220.........230.........240.........250.........260. ........270
 
   352.......360.........370.........380.........390.........400.........410.........420.........430.
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Query Sequence  VPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGVAF
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
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   432.......440.........450.........460.........470.........480.........490.........500.........510.
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Query Sequence  PYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGEQIT
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Template Conservation  .......................................... 
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FDLFAA. . . . . . . . . . . . YLTGESDGTPKTAEWAAEIC
Template Known Secondary structure  ......................................................TTTTTS



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   272..... ..280.........290.......
 
   512.......520.........530.........540.........550.........560.........570.........580.........590.
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Query Sequence  GVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLP
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Template Sequence  GLPAEQIRELARSFVAG. . . . . . RTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGG. . . . . . . . . FGLSYHYSN
Template Known Secondary structure 
S
SS......

SGGGSSTTTT
TTSTT
.........S
TTSTT
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   298.300.........310.... .....320.........330.........340.........350... ......360..
 
   592.......600.........610.........620.........630.........640.........650.........660.........670.
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Query Sequence  LAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIKAE
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Template Conservation                 ..............................................................   
Template Sequence  GGSPTSDGPALGGIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGG
Template Known Secondary structure  TTS


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   363......370....... ..380
 
   672.......680.........690.........700.........710.........720.........730.........740.........750.
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Query Sequence  ADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEELGASDGIKP
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Template Sequence  EGGATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRN. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 



SGGG
TT
TT




S

SS
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   384.....390.........400.........410.........420.........430......
 
   752.......760.........770.........780.........790.........800. ........810.........820.........
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Query Sequence  EEVEWQTAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNTSD. . MHPFIHPLSAAVDPAWESRSDWEIYKGI
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Template Sequence  . . . . . RMLKAWEKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAAL
Template Known Secondary structure  .....GGG
SSB

T
SB

GGGS

TTT




S


TT
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   444.....450.........460.........470.........480.........490.........500.........510........
 
   830.........840.........850.........860.........870.........880.........890.........900.........
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Query Sequence  AKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFTSLGPLMDKL
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Template Conservation 
 


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Template Sequence  AERLGKGAEFTEGRDEMGWISSFYEAAVKQAEFK. . . . . . . . . . . . . . . . . . . . . . . . . . NVAMPSFEDFWSEGIVEFPI
Template Known Secondary structure  TT
TT

T..........................T








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   519520.........530.........540.........550.. .......560.........570..
 
   910.........920.........930.........940.........950.........960.........970.........980.........
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Query Sequence  GNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGHVAVKAWQALGEITGREHTHLALHK
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Template Conservation                  ................................................................
Template Sequence  TEGANFVRYADFREDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SGGGG

TT
T................................................................
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   573......580........
 
   990.........1000.........1010.........1020.........1030.........1040.........1050.........1060.......
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Query Sequence  EDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLSGRQQLYQDHPWMRAFGESLVAYRPPIDT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LFNPLGTPSGLIEIYSKNIEKMGY. DDCPAHPTWMEP
Template Known Secondary structure  .........................................TTS

SSTTSSSS


.TTS
SS





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   589590.........600.........610.. .......620....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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