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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank3Aligned Residues901
% Identity25%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.... .....60.........70.........80.........90.........100.........110
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Query Sequence  EDSYRQRWQFDKIVRSTHGVNC. . TGSCSWKIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLK
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Template Sequence  EDIYRKEWKWDKVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVK
Template Known Secondary structure 
TTS

S


S

SS




TT





SSTTS



S


TTGGGTTSTTB

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   65....70.........80.........90.........100.........110.........120.........130.........140....
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  YPLIRKRLIELWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKTYGPDRVAGFS
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Template Sequence  YPLKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDA
Template Known Secondary structure  S
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SSTTS



GGGG

Template Predicted Secondary structure 

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   145.... 150.........160.........170.........180.........190
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  PIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTE
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Template Conservation                

    
                     
         
  

  

  
 
   
          
Template Sequence  PHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMHMGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSE
Template Known Secondary structure 

STT
T
B
T


S



B

GGGGGG
SS


TTT
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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   271........280.........290.........300.........310.........320.........330.........340.........350
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Query Sequence  VRYKGTKTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGS
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Template Sequence  ARYKGAEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQVMIDEKLFDR. . . . . . QFVCEQTDLPLLVRMD. . . . . .
Template Known Secondary structure  T

SS

TTGGG
S


TT
TT
S
......BSTTSTT......
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   271........280.........290.........300.........310.........320.. .......330........
 
   351........360.........370.........380.........390.........400.........410.........420.........430
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Query Sequence  YVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGVA
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Template Sequence  . . TGKFLSAEDVD. . . . . . GGEAKQFYFFDEKAGSVRKASR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..T
SB
B......S

TT
TTTT
S.......................................
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   339340......... 350.........360.........370.
 
   431........440.........450.........460.........470.........480.........490.........500.........510
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Query Sequence  FPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGEQI
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Template Conservation  .............          
 
     
  
    
 
 
  
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Template Sequence  . . . . . . . . . . . . . GTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREH. . . . . . . . . . . . . . . . . . LKDYTPEKASAK
Template Known Secondary structure  .............S



SS



S

TTS
..................GGGGS
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   372.......380.........390.........400........ .410.........420
 
   511........520.........530.........540.........550.........560.........570.........580.........590
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Query Sequence  TGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWL
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Template Sequence  CGVPVSLIRELGRKVAKK. . . . . . RTCSYIGFSSAKSYHGDLMERSLFLAMALSGNWGKPGTGAFAWAYSD. . . . . . . . .
Template Known Secondary structure 


S......

TTTTTBTTTT
SSSTT

S
B




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Template Predicted Secondary structure 




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   421........430........ .440.........450.........460.........470.........480.....
 
   591........600.........610.........620.........630.........640.........650.........660.........670
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Query Sequence  PLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIKA
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Template Conservation                                                                                  
Template Sequence  DNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKAW
Template Known Secondary structure 
SS
GGGTTT
TT

TT
SSTT
GGG
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   486...490.........500.........510.........520.........530.........540.........550.........560.....
 
   671........680.........690.........700.........710.........720.........730.........740.........750
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Query Sequence  EADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEELGASDGIK
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Template Conservation                   .  
              

       

  
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Template Sequence  TDPALKKSFGAYLDEAK. EKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGA. . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
TTSSS
.TTSS
TTTS
S
TTS


S

STT..........................
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   566...570.........580.. .......590.........600.........610........
 
   751........760.........770.........780.........790......... 800.........810.........820.........
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Query Sequence  PEEVEWQTAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNT. SDMHPFIHPLSAAVDPAWESRSDWEIYKGI
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Template Sequence  . . . . KMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALI
Template Known Secondary structure  ....TTGGG
SSB

TTGGG
SB

TT



SSS

S

STT
B
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   619620.........630.........640.........650.........660.........670.........680.........690....
 
   830.........840.........850.........860.........870.........880.........890.........900........
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Query Sequence  AKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFTSLGPLMDK.
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Template Sequence  LKKVGERAAARG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTEFNDHNGRKRRYDELYKKFTMDGHLLTNE
Template Known Secondary structure  TT.....................................


TTS
GGGTTTTT

S
Template Predicted Secondary structure 


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   695....700...... ...710.........720.........730.......
 
   909910.........920.........930.........940.........950.........960.........970.........980..
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Query Sequence  . . . . . . LGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGHVAVKAWQALGEITGREH
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Template Conservation                        
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Template Sequence  DCLKEMVDINRAVGVFAKDYTYEKFKKEGQTRFLSMGTGVSRYA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSS
TT




S
TTS....................................
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   738.740.........750.........760.........770.........780.
 
   983......990.........1000.........1010.........1020.........1030.........1040.........1050.........1060..
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Query Sequence  THLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLSGRQQLYQDHPWMRAFGESLVAYR
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Template Conservation  .............................                         
 


   
          
 

   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLDHDWYLEAGESLPTHK
Template Known Secondary structure  .............................T
S


TTS


S
S



SSTTSSB





T
SS



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   782.......790.........800.........810.........820.........830..
 
   1063......1070.........1080.........1090.........1100.........1110.........1120.........1130.........1140..
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Query Sequence  PPIDTRSVSEMRQIPPNGFPEKALNFLTPHQKWGIHSTYSENLLMLTLSRGGPIVWISETDARELTIVDNDWVEVFNANG
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Template Conservation   .............       


 
 
       

    
   
        
 


 

   

 


 
 
 
  
Template Sequence  D. . . . . . . . . . . . . TPMVGGDHPFKITGGHPRVSIHSTHLTNSHLSRLHRGQPVVHMNSKDAAELGIKDGDMAKLFNDFA
Template Known Secondary structure 
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TTSS
S



SSSSTTTTTT
TTS
SS
TT

TT

SS
Template Predicted Secondary structure 
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   833 ......840.........850.........860.........870.........880.........890.........
 
   1143......1150.........1160.........1170.........1180.........1190.........1200.........1210..... ....1220.
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Query Sequence  ALTARAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQLAWGFNYYGTVG. SNRDEF
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Template Sequence  DCEIMVRTAPNVQPKQCIVYFWDAHQYK. . . . . . . . . GWKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGVR
Template Known Secondary structure  TTS
TT




GGGSG.........GG

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   900.........910.........920....... ..930.........940.........950.........960.........970
 
   1222.....
Predicted Secondary structure 
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Query Sequence  IMIRKM
Query Conservation        
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Template Conservation 
 
 

Template Sequence  VSIKKA
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   971.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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