 |
Job Description | P19319 | Confidence | 80.13% | Date | Thu Jan 5 11:37:17 GMT 2012 |
Rank | 101 | Aligned Residues | 138 |
% Identity | 15% | Template | c2djiA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:pyruvate oxidase; |
PDBTitle: crystal structure of pyruvate oxidase from aerococcus2 viridans containing fad
|
Resolution | 1.60 Å |
|
 |
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | |
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
Q | E | L | N | Q | L | I | A | A | A | N | V | W | T | I | K | T | Y | G | P | D | R | V | A | G | F | S | P | I | P | A | M | S | M | V | S | Y | A | A | G | T | R | Y | L | S | L | L | G | G | T | C | L | S | F | Y | D | W | Y | C | D | L | P | P | A | S | P | M | T | W | G | E | Q | T | D | V | P | E | . |
. |
. |
Query Conservation |   |
|
|
|
|
|   |
|
|   |
|
|   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|   | . | . | . | . | . | . |   |
|
|
|
|
|
|
|   |
|   |
|   |   | . | . |   |
|   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
A | Q | D | I | D | A | A | V | E | L | L | N | . |
. |
. |
. |
. |
. |
N | S | K | R | P | V | I | Y | A | G | I | G | T | M | . |
. |
G | H | G | P | A | V | Q | E | L | A | R | K | I | K | A | P | V | I | T | T | G | K | N | F | E | T | F | E | W | D | F | E | A | L | T | G | S | T | Y | R | V | G | W | K | P | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | T |
| S | S |  |  |  |  |  |
| G | G | G | T | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
| T | T |
| G | G | G | S |
| T | T |
| T | T | B |
|
|
| S | S | S | S | S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
194 | . | . | . | . | . | 200 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | |
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . |
  |
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | A | D | W | Y | N | S | S | Y | I | I | A | W | G | S | N | V | P | Q | T | R | T | P | D | A | H | F | F | T | E | V | R | Y | K | G | T | K | T | I | A | I | T | P | D | Y | S | E | V | A | K | L | C | D | Q | W | L | A | P | K | Q | G | T | D | S | A | L | A | M | A | M | G | H | V | I | L | K | E |
Query Conservation |   |
  |   |
|   |   |
|
|   |   |
|
|   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
N | E | T | I | L | E | A | D | T | V | L | F | A | G | S | N | F | P | F | S | E | V | E | G | T | . |
. |
. |
. |
. |
. |
F | R | N | V | D | N | F | I | Q | I | D | I | D | P | A | M | L | G | K | R | H | H | A | D | V | A | I | L | . |
. |
G | D | A | A | L | A | I | D | E | I | L | N | K | V | D | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| S |  |  |  |  |  | S |
|
|
| T | T | T | T | T | T | T | T | . | . | . | . | . | . | T | T | T |
| S |  |  |  |  |  |  | S |
| G | G | G | T | T | S | S | S |
|
| S |  |  |  |  | . | . | S |
|  |  |  |  |  |  |  |  |  |  |  | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
266 | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | |
|
. | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|