Return to main results Retrieve Phyre Job Id

Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank4Aligned Residues894
% Identity18%Templatec1kqgA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60...... ...70.........80.........90.........100.........110......
Predicted Secondary structure 











.......






























Query SS confidence 






















. . . . . . .

















































Query Sequence  KIVRSTHGVNCTGSCSWKIYVKN. . . . . . . GLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRK
Query Conservation    
      

   
   
 


.......
 
       
 
    
 
    
 
 

 
    

 
 





 
 
Alig confidence 








.












.......
















.......
























.
Template Conservation 
 
 
 
  .
   

  
 
   
     
 

 
 


  
 
 
.......  
 

 
     
 
 

  



.
Template Sequence  KEIRNTCTY. CSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRG. . . . . . . ALCPKGAGLLDYVNSENRLRYPEYR.
Template Known Secondary structure 
SS.BTT

S
S
TTS


TT
TTTTT.......


TTT
TTB

S
.
Template Predicted Secondary structure 


.



















.......






.
Template SS confidence 















































































   44.....50.. .......60.........70.........80......... 90.........100.........110....
 
   117..120.........130.........140.........150.........160.........170.........180......
Predicted Secondary structure 












































..........
Query SS confidence 





































































. . . . . . . . . .
Query Sequence  RLIELWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKTYGPDRV. . . . . . . . . .
Query Conservation       
                            
 

 
 
 








 

 

      


 

..........
Alig confidence  .................................

..
































..........
Template Conservation  .................................  ..
 
 
  





 
 

  
  
    
              
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AP. . GSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWL
Template Known Secondary structure  .................................
T..T
SS




TTS
B
Template Predicted Secondary structure  .................................
..




















Template SS confidence 















































































   115. ...120.........130.........140.........150.........
 
   187..190.........200.........210.........220..... ....230.........240.........250.........260....
Predicted Secondary structure  .



















.















Query SS confidence  .






































.






































Query Sequence  . AGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLP. PASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPD
Query Conservation  .                  
     
              .       
         
  

  

 

 
 


    
Alig confidence  .






































.






































Template Conservation                           

 
                   
         
   
  

  
 

       
Template Sequence  STGMLCASGASNETGMLTQKFARSLGMLAVDNQARVHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVG
Template Known Secondary structure  S
TTS
TTB

GGG

S

S
SS
TGGGGG
SS

S
Template Predicted Secondary structure 

































Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   265....270..... ....280.........290.........300.........310.........320.........330.........340...
Predicted Secondary structure 

.






























Query SS confidence 










.



































































Query Sequence  AHFFTEVRYKG. TKTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVML
Query Conservation       


 

.








 
 

  

 








 

 


  


 
 


       


  


 



  
Alig confidence 










.














































......














Template Conservation        
    
 
 





 
 

  

 








 

 


   

 
   
 ...... 

   

   

  
Template Sequence  FRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGVLRYLIENNKINA. . . . . . EYVKHYTNASLLVRD
Template Known Secondary structure  S


SS

T
S


TT
TT
S
......BSTTBBB
T
Template Predicted Secondary structure 




















......






Template SS confidence 















































































   241........250.........260.........270.........280.........290......... 300.........310....
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
Predicted Secondary structure 









































































Query SS confidence 















































































Query Sequence  EPRDDGSYVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQH
Query Conservation 
         
  

  
               

 
  
    
    
                              
Alig confidence 








.......





















..........................................
Template Conservation 
        .......   
                  ..........................................
Template Sequence  DFAFEDGLF. . . . . . . SGYDAEKRQYDKSSWNYQLDEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

TT.......TTTTTT

TTSSB
B
TT..........................................
Template Predicted Secondary structure 








.......





















..........................................
Template SS confidence 















































































   315....320... ......330.........340.....
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
Predicted Secondary structure 































































Query SS confidence 















































































Query Sequence  DAVAGVAFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYT
Query Conservation                                      
   

  
 
 





                        

Alig confidence  ...................................





















..................




Template Conservation  ...................................             
 
  
   ..................   

Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYAKRDETLTHPRCVWNLLKEH. . . . . . . . . . . . . . . . . . VSRYT
Template Known Secondary structure  ...................................SSB
B
TTS
STTB..................TT

Template Predicted Secondary structure  ...................................













..................


Template SS confidence 















































































   346...350.........360....... ..370..
 
   504.....510.........520.........530.........540.........550.........560.........570.........580...
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  PAWGEQITGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKL
Query Conservation 

 

 






 
  


  
     
   
 
  
 
     

    

   
  





 



     
    
Alig confidence 


























.









































.........
Template Conservation 

 

 






 
  

   
    .      
    
     

     
   
 

 


  



......... 
Template Sequence  PDVVENICGTPKADFLKVCEVLASTSA. PDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGG. . . . . . . . . V
Template Known Secondary structure 


GGGS.TT

SSSTTTT
TTSTT
S.........
Template Predicted Secondary structure 





.



















.........
Template SS confidence 















































































   373......380.........390......... 400.........410.........420.........430.........440. .
 
   584.....590.........600.........610.........620.........630.........640.........650.........660...
Predicted Secondary structure 












































































Query SS confidence 















































































Query Sequence  RPQTGWLPLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGR
Query Conservation      
        
         
                       
                     
  
  
    
Alig confidence 






































































.........
Template Conservation      
  
  
    
      
                                                .........
Template Sequence  NALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFY. . . . . . . . .
Template Known Secondary structure 


BTTTT
STTGGG

BTT

SS


SSSS


GGGG.........
Template Predicted Secondary structure 
























































.........
Template SS confidence 















































































   443......450.........460.........470.........480.........490.........500.........510...
 
   664.....670.........680.........690.........700.........710.........720.........730.........740...
Predicted Secondary structure 



























































Query SS confidence 















































































Query Sequence  NPLGIKAEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEEL
Query Conservation                                            

 
 
   
   
   
  
  
       
      
Alig confidence  .......





















































...................
Template Conservation  .......                                   

       

  
     ...................
Template Sequence  . . . . . . . GDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKN. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .......GGG

GGGGGGGGGS

BSS


TT


S

SS
...................
Template Predicted Secondary structure  .......



































...................
Template SS confidence 















































































   514.....520.........530.........540.........550.........560.......
 
   744.....750.........760.........770.........780... ......790.........800......
Predicted Secondary structure 





















.................














Query SS confidence 







































. . . . . . . . . . . . . . . . .






















Query Sequence  GASDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCLFSD. . . . . . . . . . . . . . . . . IVLPTATWYEKDDMNTSDMHPFI
Query Conservation                      





  
  

 

 


.................






  

 
   
     
Alig confidence  .............


























.................












.








Template Conservation  .............   


 


 

  
   



  

                 




    
   .         
Template Sequence  . . . . . . . . . . . . . KVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG. SIANSGRWL
Template Known Secondary structure  .............TT
SSB

TGGGTTS

GGGG


GGG


B

GGGS
.
TTS
Template Predicted Secondary structure  .............

































.



Template SS confidence 















































































   568.570.........580.........590.........600.........610.........620.... .....630...
 
   807..810.........820.........830.........840.........850.........860...... ...870.....
Predicted Secondary structure 




































...........








Query SS confidence 



























































. . . . . . . . . . .








Query Sequence  HPLSAAVDPAWESRSDWEIYKGIAKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPCEV. . . . . . . . . . . LDWRKGECD
Query Conservation      




 



 
 

   





           
        
           ........... 

   
  
Alig confidence 



























































...........








Template Conservation        
 
 

   
 

   

  

                                                    
Template Sequence  QWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLI
Template Known Secondary structure 


S

STT
B


SSS



SSTTS


SS

TTS
Template Predicted Secondary structure 







































Template SS confidence 















































































   634.....640.........650.........660.........670.........680.........690.........700.........710...
 
   876...880.........890.........900.........910.........920.........930.........940.........950.....
Predicted Secondary structure 






























































Query SS confidence 















































































Query Sequence  LIPGKTAPNIVAVERDYPATYERFTSLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVI
Query Conservation     
           

          
           
                                        
Alig confidence 





























..................................................
Template Conservation                  
             ..................................................
Template Sequence  AKKGQLLSSFAHLRDDGTTASSCWIYTGSW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TT
B
S
GGG

SSSS
S
GGGTTS..................................................
Template Predicted Secondary structure 






















..................................................
Template SS confidence 















































































   714.....720.........730.........740...
 
   956...960.........970.........980.........990.........1000.........1010.........1020.........1030.....
Predicted Secondary structure 















































































Query SS confidence 















































































Query Sequence  LALAPETNGHVAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPW
Query Conservation          
                                      
      
   
       
 
         
 
Alig confidence  .....










































































Template Conservation  .....                                                                           
Template Sequence  . . . . . TEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAP
Template Known Secondary structure  .....TTGGG
B



TTSSS

TTBSTTTT
SSTTGGGGB
TTS
BSSGGG


SSSSS

SS
S

T
Template Predicted Secondary structure  .....










































































Template SS confidence 















































































   744.....750.........760.........770.........780.........790.........800.........810........
 
   1036...1040....... ..1050.........1060.........1070....... ..1080.........1090....
Predicted Secondary structure 







.....
























................












Query SS confidence 











. . . . .





























. . . . . . . . . . . . . . . .
















Query Sequence  RTLSGRQQLYQD. . . . . HPWMRAFGESLVAYRPPIDTRSVSEMRQIP. . . . . . . . . . . . . . . . PNGFPEKALNFLTPHQK
Query Conservation   
 


 
 
  .....       
  

   
              ................      


 
 
 
  
Alig confidence 











.....





























................
















Template Conservation   

 

                      
   

   
                               


 
 
 
  
Template Sequence  GTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLT
Template Known Secondary structure  TSS

S
TTSTTSSB
SS
TT
STT
SS





SS
TTSS
TT
TT

S
TT



TT


TTT



T
Template Predicted Secondary structure 





































































Template SS confidence 















































































   819820.........830.........840.........850.........860.........870.........880.........890........
 
   1095....1100.........1110.........1120.........1130.........1140.........1150...... ...1160......
Predicted Secondary structure 


























........




Query SS confidence 





























































. . . . . . . .









Query Sequence  WGIHSTYSENLLMLTLSRGGPIVWISETDARELTIVDNDWVEVFNANGALTARAVVSQRVPP. . . . . . . . GMTMMYHAQE
Query Conservation     

    
   
 
    
 
 


 

  






 
 
 
 

 
   
 

 

 
........


 
 
   
Alig confidence 







.




















































........








.
Template Conservation     

   .    
    
   
 


 

  



 

 
 
 
  
 
   
 

  
 
  
       
  
   .
Template Sequence  EHFHTWTK. HALLNAIAQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHW.
Template Known Secondary structure  T

TTTGG.GSS
S

T

TT
TT
TTS

TT



.
Template Predicted Secondary structure 





.































.
Template SS confidence 















































































   899900...... ...910.........920.........930.........940.........950.........960.........970......
 
   1167..1170.........1180.........1190.........1200.........1210.........1220.......
Predicted Secondary structure 















































Query SS confidence 




























































Query Sequence  RIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQLAWGFNYYGTVGSNRDEFIMIRKM
Query Conservation               
    
  
     
    
                            
Alig confidence  ......





















..




..............











Template Conservation  ......
       
   
 

    

.. 

  ..............      
 
 

Template Sequence  . . . . . . GFEGVARKGYIANTLTPNVGDA. . NSQTP. . . . . . . . . . . . . . EYKAFLVNIEKA
Template Known Secondary structure  ......
SSSSS




GGGS

S
B
T..TT

B..............
TTS
Template Predicted Secondary structure  ......


















..




..............



Template SS confidence 




























































   977..980.........990........ .1000... ......1010.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions