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Job DescriptionP19319
Confidence100.00%DateThu Jan 5 11:37:17 GMT 2012
Rank5Aligned Residues912
% Identity17%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.... .....70.........80.........90.........100.........110.........120.
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Query Sequence  KIVRSTHGVNCTGSCSWKIYV. . KNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIEL
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Template Sequence  KQTTSVCCY. CSVGCGLIVHTDKKTNRAINVEGDPDHPINEG. . . . . . . SLCAKGASTWQLAENERRPANPLYR. . . . . .
Template Known Secondary structure 
SS.BTT


TTT


TT
TTTTT.......


TS
TTS
SS
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   11........ 20.........30.........40.........50. ........60.........70......
 
   122.......130.........140.........150.........160.........170.........180...... ...190
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Query Sequence  WREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKTYGPDRV. . . . . . . . . . . AGFS
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Template Conservation  ............................ 
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . AP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASV
Template Known Secondary structure  ............................
T..T
SS



TTS

S
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   77. .80.........90.........100.........110.........120......
 
   191........200.........210.........220..... ....230.........240.........250.........260.........
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Query Sequence  PIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLP. PASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFT
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Template Conservation                      

                     
         
   

 

  
 

  
 
       
Template Sequence  GSAAMDNEECWIYQAWLRSLGLFYIEHQARIHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVM
Template Known Secondary structure 

TTS
TTB


GGG

S

S
SS
TGGGGG
SS

STT
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   127..130.........140.........150.........160.........170.........180.........190.........200......
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  EVRYKGTKTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDG
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Template Sequence  RAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFK. . . . . . DYVVNYTNASFIVGEGFAFEE
Template Known Secondary structure  TT

SS

TTGGG
S


TT
TT
S
......BGGGBBB
TT

T
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   208.210.........220.........230.........240.........250.........260 .........270.........280.
 
   350.........360.........370.........380.........390.........400.........410.........420.........
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Query Sequence  SYVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGV
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Template Conservation        .......                   ................................................
Template Sequence  GLFAGY. . . . . . . NKETRKYDKSKWGFERDEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT.......TTTT
GGGG
B
B
TT................................................
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   282..... ..290.........300......
 
   430.........440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  AFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGEQ
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Template Conservation  .............................             
 
  
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNPKRDETLKHPRCVFQIMKKH. . . . . . . . . . . . . . . . . . YERYDLDKISA
Template Known Secondary structure  .............................S
B
B
TTS
STTB..................TT

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   307..310.........320........ .330.........
 
   510.........520.........530.........540.........550.........560.........570.........580.........
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Query Sequence  ITGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGW
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Template Sequence  ICGTPKELILKVYDAYCATGK. PDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGG. . . . . . . . . VNALRGE
Template Known Secondary structure 


GGGS.TT





SSTT
SSSTT
S.........

SB
Template Predicted Secondary structure 





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   340.........350.........360 .........370.........380.........390.........400.. .......
 
   590.........600.........610.........620.........630.........640.........650.........660.........
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Query Sequence  LPLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIK
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Template Conservation   
  
    
      
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Template Sequence  ANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDAD. . . . . . . . . . .
Template Known Secondary structure  TTTT
BTTTTT

BTT

S





TT


GGGG
TTS
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   410.........420.........430.........440.........450.........460.........470........
 
   670.........680.........690.........700.........710.........720.........730.........740.........
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Query Sequence  AEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQGEELGASDGI
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Template Conservation  ......                              

       

    
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Template Sequence  . . . . . . LNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSN. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......S

B
TT


STT


S

SBS.........................
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   479480.........490.........500.........510.........520.......
 
   750.........760.........770.........780.. .......790.........800.........810......
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Query Sequence  KPEEVEWQTAAIEGKLDLLVTLDFRMSSTCLFS. . . . . . . . . . . . . DIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPA
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Template Sequence  . . . . . . . KTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEG. SISNSGRWMQWRYVGPEPR
Template Known Secondary structure  .......TT
SSS

TTTTGGGSTT

GGG


B

GGG

.
TT


SS


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   528.530.........540.........550.........560.........570.........580 .........590.........
 
   817..820.........830.........840.........850.........860.... .....870.........880.....
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Query Sequence  WESRSDWEIYKGIAKAFSQVCVGHLGKETDVVLQPLLHDSPAELSQPC. . . . . . . . . . . EVLDWRKGECDLIPGKTAPNI
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Template Sequence  KNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATF
Template Known Secondary structure  TT
B
S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
G
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   600.........610.........620.........630.........640.........650.........660.........670.........
 
   886...890.........900.........910.........920.........930.........940.........950.........960.....
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Query Sequence  VAVERDYPATYERFTSLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGH
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Template Conservation        
                                            
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Template Sequence  GHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRAS. . . . . . . . . . . . . . . . .
Template Known Secondary structure  GG

TTS
B

SSGGGTTSTTGGG
B




T

TTBSTTTT
SSTTGGGG.................
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   680.........690.........700.........710.........720.........730.........740..
 
   966...970.........980.........990.........1000.........1010.........1020.........1030.........1040.....
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Query Sequence  VAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVHELIPWRTLSGRQQLY
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Template Conservation  .......................                                                   
     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . VDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLY
Template Known Secondary structure  .......................B
TTS
BS
GGG
STTTTS

SS
S

TT
TTT


S
TTSSSS
B
SS
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   743......750.........760.........770.........780.........790.........
 
   1046...1050.........1060..... ....1070.........1080.........1090......... 1100.........1110
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Query Sequence  QDHPWMRAFGESLVAYRPPI. . . . . . . . . . . . . . DTRSVSEMRQIPPNGFPEKALNFLTPHQKWGIHS. TYSENLLMLTL
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Template Conservation         ....  
    
                                 

  
 
 
     

   
 
   
  
Template Sequence  GPGREDG. . . . PLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLE
Template Known Secondary structure 
TTSTT
....SS






SSS



SS
S

S
TT

SS

SS




TTS


TT

TTSTS
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   800...... ...810.........820.........830.........840.........850.........860.........870.....
 
   1111........1120.........1130.........1140.........1150.........1160......... 1170.........1180.........
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Query Sequence  SRGGPIVWISETDARELTIVDNDWVEVFNANGALTARAVVSQRVPPGMTMMYHAQERIM. NIPGSEVTGMRGGIHNSVTR
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Template Conservation    
   
 


 

  



 

 
 
 
  
 
   
 

  
 

 
       
  
   
       
   
 

 
Template Sequence  AEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTP
Template Known Secondary structure  S
S

T

TT
TT
TT


TT
S


TTSSTTS


GGGS

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   876...880.........890.........900.........910.........920.........930.........940.........950.....
 
   1190.........1200.........1210.........1220.......
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Query Sequence  VCPKPTHMIGGYAQLAWGFNYYGTVGSNRDEFIMIRKM
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Template Sequence  SVGNP. . NTGIP. . . . . . . . . . . . . . ETKAFMVNVTKA
Template Known Secondary structure  BSSS
..SSBSB..............

S

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   956...960 ..... ....970.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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