Job Description P0A9C0 Confidence 98.96% Date Thu Jan 5 11:09:50 GMT 2012 Rank 170 Aligned Residues 196 % Identity 13% Template c1xdiA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis Resolution 2.81 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	V	I	I	I	G	G	G	A	T	G	A	G	I	A	R	D	C	A	L	R	.	.	.	G	L	R	V	I	L	V	E	R	H	D	I	A	T	G	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	N	H	G	L	L	H	S	G	A	R	Y	A	V	T	D	A	E	S	A	R
Query Conservation																								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	I	V	I	L	G	G	G	P	A	G	Y	E	A	A	L	V	A	A	T	S	H	P	E	T	T	Q	V	T	V	I	D	C	D	G	I	G	G	A	A	V	L	D	D	C	V	P	S	K	T	F	I	A	S	T	G	L	R	T	E	L	R	R	A	P	H	L	G	F	H	K	I	S	L	P	Q	I	H	A
Template Known Secondary structure										S															T	T	T								S	S		T	T						T	S																		T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																																																						.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	C	I	S	E	N	Q	I	L	K	R	I	A	R	H	C	V	E	P	T	N	G	L	F	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	K	T	L	A	A	A	Q	S	A	D	I	T	A	Q	L	L	S	M	G	V	Q	V	I	A	G	R	G	E	L	I	D	S	T	P	G	L	A	R	H	R	I	K	A	T	A	A	D	G	S	T	S	E	H	E	A	D	V	V	L	V	A	T	G	A	S	P	R	I	L	P	S	A	Q	P	D	G	E	R
Template Known Secondary structure																					T	T						S							S	S	S			S	S								T	T	S								S														G	G	G				S	S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	D	L	S	F	Q	A	T	F	I	R	A	C	E	E	A	G	I	S	A	E	A	I	D	P	Q	Q	A	R	I	I	E	P	A	V	N	P	A	L	I	G	A	V	K	V	P	D	G	T	V	D	P	F	R	L	T	A	A	N	M	L	D	A	K	E	H	G	A	V	I	L	T	A	H	E	V	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	W	R	Q	L	Y	D	L	D	A	L	P	D	H	L	I	V	V	G	S	G	V	T	G	A	E	F	V	D	A	Y	T	E	L	G	V	P	V	T	V	V	A	S	Q	D	H	V	L	P	Y	E	D	A	D	A	A	L	V	L	E	E	S	F	A	E	R	G	V	R	L	F	K	N	A	R	A	A	S
Template Known Secondary structure					G	G	G	G	G	G		S	S			S	S					S		S													T	T								S	S	S	S	S	S			S	S														T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	E	G	A	T	V	C	G	V	R	V	R	N	H	L	T	G	E	T	Q	A	L	H	A	P	V	V	V	N	A	A	G
Query Conservation
Alig confidence														.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		V	T	R	T	G	A	G	V	L	V	T	M	.	.	.	.	.	.	T	D	G	R	T	V	E	G	S	H	A	L	M	T	I	G
Template Known Secondary structure						S	S	S						.	.	.	.	.	.	T	T	S						S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions