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Job DescriptionP0A9C0
Confidence99.41%DateThu Jan 5 11:09:50 GMT 2012
Rank70Aligned Residues401
% Identity12%Templatec1s3bB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40........ .50.........60.........70.....
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Query Sequence  SSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATG. . . . RNHGLLHSGARYAVTDAESARECISEN. . . . . . . .
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Template Sequence  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVN
Template Known Secondary structure  B
S

BTT


SSSSSBTT

TTTSS


TT
TT



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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   76...80.........90..... ....100..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QILKRIARHCVEPTNGLFIT. . . . . . . . . . . . . . . . . . . . . LPEDDLS
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Template Conservation            
                                                         
           
Template Sequence  EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQ
Template Known Secondary structure 
SSTT
SSS



STTS
TT
GGGSTTTSB
SS
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGA
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Template Sequence  LATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE
Template Known Secondary structure  SS
TTTSBTTT

STTSTTSTT
TGGGSS


SSS
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   183......190.........200.........210... ......220.........230.........240.........250..
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Query Sequence  TVCGVRVRNHLTGETQALHAPVVVNAAGIWG. . . . . . . . . . QHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPS
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Template Sequence  NVLVET. . . . . . LNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMII
Template Known Secondary structure  S......TTS
S
S
GGGGGGSS


TTS

B


SS
GGGGGT
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   244..... 250.........260.........270.........280.........290.........300.........310.......
 
   253 ......260.........270.........280.........290.........300.........310.........320....
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Query Sequence  D. . . . . . . . ADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDP
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Template Conservation                                           
        
                   
   
   
 
Template Sequence  DGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGC
Template Known Secondary structure 
SSS
S
S


TTS
S
TTTS
T
GGGG

SGGG
TTT
SS
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   325....330.........340.........350.. .......360.........370.........380.........390......
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Query Sequence  SGRNVSRGIVLLDHAERDGLDGFITITG. . . . . . . . GKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVT
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Template Sequence  YTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPI
Template Known Secondary structure  S
B


TTGGGTT

BTT
SGGG
SSSTTSTTSS
GGGSS





SSS




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   398.400.........410.........420.........430.........440.........450.........460.........470.......
 
   397..400.........410....
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Query Sequence  LRKVISLPAPLRGSAVYR
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Template Sequence  TTTFLERHLPSVPGLLRL
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   478.480.........490.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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