Return to main results Retrieve Phyre Job Id

Job DescriptionQ46942
Confidence99.83%DateThu Jan 5 12:36:01 GMT 2012
Rank6Aligned Residues95
% Identity17%Templated1p2fa1
SCOP infoDNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators PhoB-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGF
Query Conservation 



  
 
      
         
 
      

  
       


  
   

   
  
   

   

 


 
Alig confidence 




.











...





































...

















Template Conservation     
 .   
     
  ...    
 

  
  

  
       

   
   

  ...      
   
 





Template Sequence  YDFGD. LKIDATGFTVFL. . . KGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFWED. . . PVSPRVVDTVIKRIRKAI
Template Known Secondary structure  TT.TTTT...TT



TTTS

SS...


T
Template Predicted Secondary structure 

.



...










...


Template SS confidence 















































































   123.... ..130......... 140.........150.........160.........170....... ..180.........190.....
 
   83......90.........100.....
Predicted Secondary structure 










Query SS confidence 






















Query Sequence  RAVGDTTHSLIATVPRRGFKIHN
Query Conservation     
      
 



 

 
  
Alig confidence 







.













Template Conservation          . 
 

 
 

 
 
Template Sequence  EDDPNRPR. YIKTIWGVGYXFTG
Template Known Secondary structure 
SSTTS
S.STTT

Template Predicted Secondary structure 





.








Template SS confidence 






















   196...200... ......210.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions