Job Description P61887 Confidence 100.00% Date Thu Jan 5 12:07:25 GMT 2012 Rank 10 Aligned Residues 239 % Identity 18% Template c3pnnA_ PDB info PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	G	I	I	L	A	G	G	S	G	T	R	L	H	P	I	T	R	G	V	S	K	Q	L	L	P	I	Y	D	K	P	M	I	Y	Y	P	L	S	V	L	M	L	A	G	I	R	E	I	L	I	I	T	T	P	E	D	K	G	Y	F	Q	R	L	L	G	D	G	S	E	F	G	I	Q	L	E	Y	A	E	Q
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		P	T	L	F	V	L	A	A	G	X	G	S	R	Y	G	S	L	K	.	.	.	Q	L	D	G	I	G	P	G	G	D	T	I	X	D	Y	S	V	Y	D	A	I	R	A	G	F	G	R	L	V	F	V	I	R	H	S	F	E	K	E	F	R	E	K	I	L	T	K	Y	E	G	R	I	P	V	E	L	V	F	Q
Template Known Secondary structure									T	T		B		T	T	S	S	B		.	.	.						S	T	T	S															T										G	G	G								T					T	T	T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81																.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	D	G	L	A	Q	A	F	I	I	G	E	T	F	L	N	G	E	P	S	C	L	V	L	G	D	N	I	F	F	G	Q	G	F	S	P	K	L	R	.	.	.	.	H	V	A	A	R	T	E	G	A	T	V	F	G	Y	Q	V	M	D	P	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																								.	.	.	.
Template Conservation																																		.
Template Sequence		E	L	D	R	L	P	E	G	F	S	C	P	E	G	R	E	K	P	W	G	T	N	H	A	V	L	X	G	R	D	A	I	.	R	E	P	F	A	V	I	N	A	D	D	F	Y	G	R	N	G	F	E	V	L	A	R	K	L	X	T	L	E	G	K	Q	G	E	Y	C	X	V	G	Y	R	V	G	N	T	L	S
Template Known Secondary structure			T	T				T	T					T	T			S										T	T	T	T	T		.		S							S	S		B															T	T	T	T		S	S									G	G	G	S		B
Template Predicted Secondary structure																																		.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		142	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.
Predicted Secondary structure					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		R	F	G	.	.	.	.	.	V	V	E	F	D	D	N	F	R	A	I	S	L	E	E	K	P	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	S	N	W	A	V	T	G	L	Y	F	Y	D	S	K	V	V	E	Y	A	K	Q	V	.	.	.	.	.	.	.	.	K	P
Query Conservation					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	G	G	V	S	R	G	V	C	Q	V	D	E	K	H	L	L	T	G	V	V	E	R	T	G	I	E	R	T	D	G	T	I	S	F	R	D	E	T	G	K	I	C	T	L	A	E	D	A	P	V	S	X	N	X	W	G	F	T	P	D	Y	F	D	Y	S	E	E	L	F	I	N	F	L	N	A	H	G	Q
Template Known Secondary structure		T	T	B											T	T	S	B														T	T							T	T	S							T	T												T																		T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	R	G	E	L	E	I	T	S	I	N	Q	M	Y	L	E	A	G	N	L	T	V	E	L	L	G	R	G	F	A	W	L	D	T	G	T	H	D	S	L	I	E	A	S	T	F	V	Q	T	V	E	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	K	S	E	F	F	I	P	F	V	V	N	D	L	I	R	S	G	R	A	S	V	E	V	L	D	T	T	A	R	W	F	G	V	T	Y	S	D	D	R	P	G	V	V	A	K	L	R	E	L	T	E	A
Template Known Secondary structure			S	S																T	S									S				B			S	S	G	G	G														T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions