Return to main results Retrieve Phyre Job Id

Job DescriptionP61887
Confidence99.88%DateThu Jan 5 12:07:25 GMT 2012
Rank48Aligned Residues199
% Identity11%Templatec3okrA_
PDB info PDB header:transferaseChain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40..... ....50.........60.........70.........80.......
Predicted Secondary structure 


















.


















Query SS confidence 




































.









































Query Sequence  GSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAG. IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLA
Query Conservation 
 



 


   

 



 




   
  
   
.
  
 

                                

 
Alig confidence 







...

























.























........









Template Conservation 
      
...  

 
  
 




   
  
        


                  ........          
Template Sequence  GEVVAIVP. . . AAPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRA. . . . . . . . MIVAGGSNRT
Template Known Secondary structure 

...


GGG
TTTS



GGGGGG
........

SS
Template Predicted Secondary structure 

...


















........




Template SS confidence 















































































   6...10... ......20.........30.........40.........50.........60.... .....70....
 
   88.90....... ..100......... 110.........120.........130.........140.........150.........160.....
Predicted Secondary structure 
.







.

























Query SS confidence 









.











.























































Query Sequence  QAFIIGETFL. NGEPSCLVLGDN. IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPK
Query Conservation   

      
.     

   
 .                      
          

 
  
    
    


    
Alig confidence 









.











.






























.....



















Template Conservation   

  

      
 
     
 
 
    
   
                    .....                    
Template Sequence  DTVNLALTVLSEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTI. . . . . KAVDANGVVLGTPERAGLRA
Template Known Secondary structure  TT


S

TT
TT

TT
S

SS

.....

TTS


TTS


Template Predicted Secondary structure 




















.....





Template SS confidence 















































































   85....90.........100.........110.........120.........130......... 140.........150.........
 
   166...170.........180.........190.........200.........210.........220.........230........
Predicted Secondary structure 






















Query SS confidence 








































































Query Sequence  SNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ
Query Conservation 
     


     
   
         
  
 
    

  
            
 



 
 
  
     
Alig confidence 

....












..........















.


























Template Conservation    ....         
   ..........             
  .
  
       







  

 

 
Template Sequence  VQ. . . . TPQGFTTDLLLRS. . . . . . . . . . YQYTDDASLVEHIGGQ. VQVVDGDPLAFKITTKLDLLLAQAIVR
Template Known Secondary structure 
....S
..........T



TT

.


GGG



ST
Template Predicted Secondary structure 
....


..........





.







Template SS confidence 








































































   163. .....170....... ..180.........190... ......200.........210.........220
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions