Job Description P61887 Confidence 100.00% Date Thu Jan 5 12:07:25 GMT 2012 Rank 31 Aligned Residues 226 % Identity 20% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		M	K	.	.	G	I	I	L	A	G	G	S	G	T	R	L	H	P	I	T	R	G	V	S	K	Q	L	L	P	I	Y	D	K	P	M	I	Y	Y	P	L	S	V	L	M	L	A	G	I	R	E	I	L	I	I	T	T	P	E	D	K	G	Y	F	Q	R	L	L	G	D	G	S	E	F	G	I	Q	L	E	Y	A
Query Conservation				.	.
Alig confidence				.	.														.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		M	S	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	.	.	.	.	.	.	G	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	.	.	.	.	.	.	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T
Template Known Secondary structure												S			S	S	S	T	.	.	.	.	.	.	T	G	G	G				T	T														T	T		S							S		.	.	.	.	.	.										T	T
Template Predicted Secondary structure																			.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150
Predicted Secondary structure																					.	.															.																																			.	.	.	.	.
Query SS confidence																					.	.															.																																			.	.	.	.	.
Query Sequence		E	Q	P	S	P	D	G	L	A	Q	A	F	I	I	G	E	T	F	L	.	.	N	G	E	P	S	C	L	V	L	G	D	N	I	F	.	F	G	Q	G	F	S	P	K	L	R	H	V	A	A	R	T	E	G	A	T	V	F	G	Y	Q	V	M	D	P	E	R	F	G	V	.	.	.	.	.	V	E	F	D	D
Query Conservation																					.	.															.																																			.	.	.	.	.
Alig confidence																					.	.															.																																			.	.	.	.	.
Template Conservation
Template Sequence		S	P	N	H	Q	S	G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N	A	V	K	V	I	T	D	K
Template Known Secondary structure			S	S	S			S											T	T			T	T								T	T		T	T															T	S	S		S															T		T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.														.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	F	R	A	I	S	L	E	E	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	P	K	S	N	W	A	V	T	G	L	Y	F	Y	D	S	K	V	V	E	Y	A	K	Q	V	K	P	S	E	R	G	E	L	E	I	T	S	I	N	Q	M	Y	L	E	A	G	N	L	T	V	E	L	L	G	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation																																																																			.
Template Sequence		S	G	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	W	Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	.	V	L	W	H	G	E	K	I	H	V	A	V	A	L
Template Known Secondary structure		T	S	B						S	S		S	S							T	S	S	S					S																						S										T		T	T			.				T	T									S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	A	W	L	D	T	G	T	H	D	S	L	I	E	A	S	T	F	V	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	P	P	A	G	V	D	T	P	E	D	L	E	V	V	R	R	I	V	A	E
Template Known Secondary structure		S							S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions