Job Description P61887 Confidence 99.96% Date Thu Jan 5 12:07:25 GMT 2012 Rank 37 Aligned Residues 215 % Identity 15% Template c2xwlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg Resolution 1.49 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		G	I	I	L	A	G	G	S	G	T	R	L	H	P	I	T	R	G	V	S	K	Q	L	L	P	I	Y	D	K	P	M	I	Y	Y	P	L	S	V	L	M	L	A	G	.	I	R	E	I	L	I	I	T	T	P	E	D	K	G	Y	F	Q	R	L	L	G	D	G	S	E	F	G	I	Q	L	E	Y	A	E	Q	P
Query Conservation																																													.
Alig confidence															.	.	.																												.																										.	.	.	.	.	.	.
Template Conservation															.	.	.																																																						.	.	.	.	.	.	.
Template Sequence		A	V	V	P	A	A	G	S	G	E	R	L	R	.	.	.	A	G	R	P	K	A	F	V	T	L	G	G	T	P	L	L	E	H	A	L	S	G	L	R	A	S	G	V	I	D	R	I	V	I	A	V	P	P	A	L	T	D	E	S	K	L	V	F	G	G	E	D	S	.	.	.	.	.	.	.	V	I	V	S
Template Known Secondary structure											T	T	T	T	.	.	.	S	S	S		G	G	G	S			T	T														T	S											G	G	G										B	T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.																																																						.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70								.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.														.
Query SS confidence																			.														.
Query Sequence		S	P	D	G	L	A	Q	A	F	I	I	G	E	T	F	L	N	.	G	E	P	S	C	L	V	L	G	D	N	I	F	.	F	G	Q	G	F	S	P	K	L	R	H	V	A	A	R	T	E	G	A	T	V	F	G	Y	Q	V	M	D	P	E	R	F	G	V	V	E	F	D	D	N	F	R	A	I	S	L	E	E
Query Conservation																			.														.
Alig confidence																			.														.																														.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		G	G	V	D	R	T	E	S	V	A	L	A	L	E	A	A	G	D	A	E	F	V	L	V	H	D	A	A	R	A	L	T	P	P	A	L	I	A	R	V	V	A	A	L	K	E	G	H	S	A	V	V	P	G	L	A	P	A	D	T	I	.	.	.	.	.	K	A	V	D	A	N	G	A	V	L	G	T	P	E
Template Known Secondary structure				S	S										T	T	S		S		S							T	T		T	T																T		S									S	S			.	.	.	.	.					T	T	S
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	K	Q	P	K	S	N	W	A	V	T	G	L	Y	F	Y	D	S	K	V	V	E	Y	A	K	Q	V	K	P	S	E	R	G	E	L	E	I	T	S	I	N	Q	M	Y	L	E	A	G	N	L	T	V	E	L	L	G	R	G	F	A	W	L	D	T	G	T	H	D	S	L	I	E	A	S	T	F	V	Q	T
Query Conservation
Alig confidence						.	.	.	.																						.	.	.	.																			.
Template Conservation						.	.	.	.																						.	.	.	.																			.
Template Sequence		R	A	G	L	.	.	.	.	R	A	V	Q	T	P	Q	G	F	H	A	D	V	L	R	R	A	Y	A	R	A	.	.	.	.	T	A	G	G	V	T	D	D	A	S	L	V	E	Q	L	G	T	P	.	V	Q	I	V	D	G	D	P	L	A	F	K	I	T	T	P	L	D	L	V	L	A	E	A	V	L	A	H
Template Known Secondary structure		G	G	G		.	.	.	.					S														T	T		.	.	.	.		S	S	S										T	T	T			.								G	G	G					S
Template Predicted Secondary structure						.	.	.	.																						.	.	.	.																			.
Template SS confidence
		150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		221	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions