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Job DescriptionP61887
Confidence100.00%DateThu Jan 5 12:07:25 GMT 2012
Rank30Aligned Residues221
% Identity22%Templatec1jylC_
PDB info PDB header:transferaseChain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase; PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc)
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ
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Template Sequence  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK. . . . EKYGVRLVFNDK
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S

GGGTTTTSSS
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TT
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   6...10.........20.........30.........40.........50.........60......... 70.........80.
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  PSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEK
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Template Sequence  YADYNNFYSLYLVKEEL. . ANSYVIDADNYLFKNMFRNDLTR. . . . . . . STYFSVYREDCTNEWFLVYGDDYKVQDIIVD
Template Known Secondary structure  TTTS
TTGGG
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B
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   82.......90........ .100.........110.........120. ........130.........140.........150..
 
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Query Sequence  PKQPKSNWAVTGLYFYDSK. . . . VVEYAKQVK. PSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST
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Template Sequence  . . . SKAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNS. IYEIDSVQDYRKLEE
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   153......160.........170.........180.........190.........200.........210... ......220........
 
   236..
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Query Sequence  FVQ
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Template Sequence  ILK
Template Known Secondary structure  T
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   229230.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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