Job Description P0AFD6 Confidence 34.18% Date Thu Jan 5 11:25:59 GMT 2012 Rank 67 Aligned Residues 61 % Identity 21% Template c2pmzS_ PDB info PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus Resolution 3.40 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	G	R	I	V	L	T	R	D	P	D	G	E	E	R	C	V	A	C	N	L	C	A	V	A	C	P	V	G	C	I	S	L	Q	K	A	E	T	K	D	G	R	W	Y	P	E	F	F	R	I	N	F	S	R	C	I	F	C	G	L	C	E	E	A	C	P	T	T	A	I	Q	L	T	P	D	F	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.																					.
Template Conservation											.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.																					.
Template Sequence		V	R	Y	Y	P	K	V	E	I	.	.	.	.	.	.	.	L	A	N	C	E	K	A	V	N	V	C	P	E	G	V	F	E	L	K	D	G	K	.	.	.	.	.	.	.	.	.	L	S	V	K	N	E	L	S	C	T	L	C	E	E	C	L	R	Y	C	N	.	G	S	I	R	I	S	F	V	E	D
Template Known Secondary structure											.	.	.	.	.	.	.	S	S			S	T						T	T	S					S	S	S		.	.	.	.	.	.	.	.	.				S		T	T	T			S			T	T					T	.	S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		164	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.										.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions