Job Description Q46843 Confidence 99.91% Date Thu Jan 5 12:35:09 GMT 2012 Rank 7 Aligned Residues 194 % Identity 16% Template c3lv8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		R	V	I	A	I	V	G	C	D	G	S	G	K	S	T	L	T	A	S	L	V	N	E	L	A	A	R	M	P	T	E	.	H	I	Y	L	G	Q	S	S	G	R	I	G	E	W	I	S	Q	L	P	V	I	G	A	P	F	G	R	Y	L	R	S	K	A	A	H	V	H	E	K	P	S	T	P	P	G	N	I	T
Query Conservation																																	.
Alig confidence																																	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	A	E	K	L	R	A	L	V	K	E	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	E	E	L	Q	D	I
Template Known Secondary structure									S	T	T	S																T	T									S	S		S	S												S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																		.	60	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	I	Y	L	L	S	C	W	R	A	Y	K	F	R	K	M	L	C	K	S	Q	Q	G	F	L	L	I	T	D	R	Y	P	Q	V	E	V	P	G	F	R	F	D	G	P	Q	L	A	K	T	T	G	G	N	G	W	I	K	M	L	R	Q	R	E	L	K	L	Y	Q	W	M	A	S	Y	L	P	V	L	L
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	L	L	L	V	Y	A	A	R	V	Q	L	V	E	N	V	I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T
Template Known Secondary structure																		T							T	T							S									T	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.															T	T				S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.													.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		I	R	L	G	I	D	E	Q	T	A	F	A	R	.	.	.	.	K	P	D	H	Q	L	A	A	L	Q	E	K	I	A	V	T	P	Q	L	T	F	N	G	A	K	I	L	E	L	D	G	R	H	P	A	D	E	I	L	Q	A	S	L	R	A	I	H	A	A	L	S
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence		L	Y	L	D	I	D	P	K	L	G	L	E	R	E	L	D	R	I	E	K	M	D	I	S	F	F	E	R	A	R	E	R	Y	L	E	L	A	N	S	D	D	S	V	V	M	I	D	A	A	Q	S	I	E	Q	V	T	A	D	I	R	R	A	L	Q	D	W	L	S
Template Known Secondary structure																		T	T	T	T	S																				T	T						T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions